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13_1_20cm_4_scaffold_163

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_163_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1..1044
DNA (1044bp) protein (348aa)
Mg chelatase subunit ChlI; K07391 magnesium chelatase family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
transcriptional regulator id=14625658 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
Mg chelatase subunit ChlI
13_1_20cm_4_scaffold_163_2
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

1086..1622
DNA (537bp) protein (179aa)
isochorismatase hydrolase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Isochorismatase hydrolase id=3268091 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Methylotenera taxon_order=Methylophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hydrolase
13_1_20cm_4_scaffold_163_3
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

1659..1802
DNA (144bp) protein (48aa)
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
13_1_20cm_4_scaffold_163_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(1803..2387)
DNA (585bp) protein (195aa)
Lytic transglycosylase, catalytic Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Lytic transglycosylase, catalytic id=3544309 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Lytic transglycosylase, catalytic
13_1_20cm_4_scaffold_163_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2539..4932)
DNA (2394bp) protein (798aa)
ATP-dependent proteinase. Serine peptidase. MEROPS family S16 (EC:3.4.21.53) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ATP-dependent proteinase. Serine peptidase. MEROPS family S16 (EC:3.4.21.53) id=14625663 bin=bin7_NC10_sister species=Chthonomonas calidirosea genus=Chthonomonas taxon_order=Chthonomonadales taxon_class=Chthonomonadetes phylum=Armatimonadetes tax=bin7_NC10_sister organism_group=NC10
ATP-dependent proteinase. Serine peptidase. MEROPS family S16 (EC:3.4.21.53)
13_1_20cm_4_scaffold_163_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4960..5346)
DNA (387bp) protein (129aa)
transcriptional regulator; K13640 MerR family transcriptional regulator, heat shock protein HspR Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Transcriptional regulator id=3544313 bin=GWA2_Methylomirabilis_73_35 species=Hydrogenivirga sp. 128-5-R1-1 genus=Hydrogenivirga taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transcriptional regulator
13_1_20cm_4_scaffold_163_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(5343..6230)
DNA (888bp) protein (296aa)
Zn finger domain-containing DnaJ-class molecular chaperone; K03686 molecular chaperone DnaJ Tax=GWA2_Rokubacteria_73_35_curated
DnaJ-class molecular chaperone with C-terminal Zn finger domain id=3544317 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Zn finger domain-containing DnaJ-class molecular chaperone
13_1_20cm_4_scaffold_163_8
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(6237..8042)
DNA (1806bp) protein (602aa)
dnaK; chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
dnaK; chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70) id=14625666 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
dnaK; chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70)
13_1_20cm_4_scaffold_163_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(8115..8585)
DNA (471bp) protein (157aa)
Heat shock protein Hsp20 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Heat shock protein Hsp20 id=4311462 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Heat shock protein Hsp20
13_1_20cm_4_scaffold_163_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

8885..9409
DNA (525bp) protein (175aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein id=4311463 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_163_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9366..9692)
DNA (327bp) protein (109aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4311464 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_163_12
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

9755..10564
DNA (810bp) protein (270aa)
protein mazG Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Protein mazG id=4311465 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
protein mazG
13_1_20cm_4_scaffold_163_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

10561..11097
DNA (537bp) protein (179aa)
phosphatase Tax=GWA2_Rokubacteria_73_35_curated
Predicted phosphatase id=4311466 bin=GWA2_Methylomirabilis_73_35 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phosphatase
13_1_20cm_4_scaffold_163_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11104..12846
DNA (1743bp) protein (581aa)
type II secretion system protein E; K02652 type IV pilus assembly protein PilB Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Type IV-A pilus assembly ATPase PilB id=3773045 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
type IV-A pilus assembly ATPase PilB
13_1_20cm_4_scaffold_163_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12878..13999
DNA (1122bp) protein (374aa)
twitching motility protein; K02669 twitching motility protein PilT Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Twitching motility protein id=3773050 bin=GWC2_Methylomirabilis_70_16 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
twitching motility protein
13_1_20cm_4_scaffold_163_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14019..15113
DNA (1095bp) protein (365aa)
hypothetical protein n=1 Tax=Nitrospina sp. SCGC AAA288-L16 RepID=UPI00036995D5
pilC; type 4 fimbrial assembly protein pilC Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Type II secretion system F domain-containing protein
13_1_20cm_4_scaffold_163_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15113..16735
DNA (1623bp) protein (541aa)
multi-sensor signal transduction histidine kinase; K02668 two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Multi-sensor signal transduction histidine kinase id=4686862 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good rbh
Multi-sensor signal transduction histidine kinase
13_1_20cm_4_scaffold_163_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16728..18110
DNA (1383bp) protein (461aa)
pilR; transcriptional regulatory protein pilR; K02667 two-component system, NtrC family, response regulator PilR Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
pilR; regulator protein pilR; K02667 two-component system, NtrC family, response regulator PilR id=14625676 bin=bin7_NC10_sister species=Bdellovibrio bacteriovorus genus=Bdellovibrio taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
pilR; transcriptional regulatory protein pilR
13_1_20cm_4_scaffold_163_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

18355..18771
DNA (417bp) protein (139aa)
Fimbrial protein pilin Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Fimbrial protein pilin id=4953732 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Fimbrial protein pilin
13_1_20cm_4_scaffold_163_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

19034..20935
DNA (1902bp) protein (634aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Tetratricopeptide TPR_2 repeat protein id=4953734 bin=GWA2_Methylomirabilis_73_35 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein
13_1_20cm_4_scaffold_163_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

20940..21737
DNA (798bp) protein (266aa)
prepilin peptidase; K02654 leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Type 4 prepilin-like proteins leader peptide-processing enzyme id=4383531 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
prepilin peptidase
13_1_20cm_4_scaffold_163_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

21710..22174
DNA (465bp) protein (155aa)
Putative type 4 fimbrial pilin related transmembrane protein Tax=GWA2_Rokubacteria_73_35_curated
Putative type 4 fimbrial pilin related transmembrane protein id=4953736 bin=GWA2_Methylomirabilis_73_35 species=Ralstonia sp. PBA genus=Ralstonia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_163_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

22171..22608
DNA (438bp) protein (146aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=4953737 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_163_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22562..23119
DNA (558bp) protein (186aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=4953740 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_163_25
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

23288..24337
DNA (1050bp) protein (350aa)
type IV pilus assembly protein PilM; K02662 type IV pilus assembly protein PilM Tax=GWA2_Rokubacteria_73_35_curated
Type IV pilus assembly protein PilM id=4953742 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
type IV pilus assembly protein PilM
13_1_20cm_4_scaffold_163_26
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

24334..24897
DNA (564bp) protein (188aa)
fimbrial assembly family protein; K02663 type IV pilus assembly protein PilN Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
fimbrial assembly family protein; K02663 type IV pilus assembly protein PilN id=14625682 bin=bin7_NC10_sister species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
fimbrial assembly family protein
13_1_20cm_4_scaffold_163_27
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

24899..25498
DNA (600bp) protein (200aa)
pilus assembly protein PilO; K02664 type IV pilus assembly protein PilO Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=14625683 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
Pilus assembly protein PilO
13_1_20cm_4_scaffold_163_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

25510..25965
DNA (456bp) protein (152aa)
Uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=4614259 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_20cm_4_scaffold_163_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

25990..28128
DNA (2139bp) protein (713aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Type IV pilus secretin PilQ id=4383521 bin=GWF2_Methylomirabilis_70_14 species=Psychrobacter sp. genus=Psychrobacter taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
type IV pilus secretin PilQ
13_1_20cm_4_scaffold_163_30
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

28128..29303
DNA (1176bp) protein (392aa)
chorismate synthase (EC:4.2.3.5); K01736 chorismate synthase [EC:4.2.3.5] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
chorismate synthase (EC:4.2.3.5); K01736 chorismate synthase [EC:4.2.3.5] id=14625686 bin=bin7_NC10_sister species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10 rbh
aroC; chorismate synthase
Displaying items 1-30 of 37 in total

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