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13_1_20cm_4_scaffold_1647

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_1647_1
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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15..1817
DNA (1803bp) protein (601aa)
aldehyde dehydrogenase (EC:1.3.99.16)
Tat (Twin-arginine translocation) pathway signal sequence n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P474_9BRAD
Tat (Twin-arginine translocation) pathway signal sequence {ECO:0000313|EMBL:EKS33223.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;"
13_1_20cm_4_scaffold_1647_2
Geobacter bemidjiensis, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1933..3156)
DNA (1224bp) protein (408aa)
Membrane protein, major facilitator superfamily n=1 Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=B5EHN3_GEOBB
Membrane protein, major facilitator superfamily {ECO:0000313|EMBL:ACH38243.1}; TaxID=404380 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" sou
major facilitator superfamily transporter
13_1_20cm_4_scaffold_1647_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(3206..5350)
DNA (2145bp) protein (715aa)
Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DN80_SINAD id=5224646 bin=16ft_combo_ws3_JS1 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein
13_1_20cm_4_scaffold_1647_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(5347..5814)
DNA (468bp) protein (156aa)
Isoquinoline 1-oxidoreductase; K07302 isoquinoline 1-oxidoreductase, alpha subunit [EC:1.3.99.16] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI0003829CAF
Isoquinoline 1-oxidoreductase
13_1_20cm_4_scaffold_1647_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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5935..6372
DNA (438bp) protein (146aa)
competence protein ComEA; K02237 competence protein ComEA Tax=GWA2_Rokubacteria_73_35_curated
Helix-hairpin-helix motif (Fragment) id=4231238 bin=GWA2_Methylomirabilis_73_35 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
helix-turn-helix domain-containing protein
13_1_20cm_4_scaffold_1647_6
unknown

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comp(6362..7105)
DNA (744bp) protein (248aa)

This feature has no annotations

13_1_20cm_4_scaffold_1647_7
unknown

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comp(7396..7587)
DNA (192bp) protein (64aa)

This feature has no annotations

13_1_20cm_4_scaffold_1647_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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8487..8690
DNA (204bp) protein (68aa)
ComE-like competence protein; K02238 competence protein ComEC Tax=GWA2_Rokubacteria_73_35_curated
ComE-like competence protein id=4231236 bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hydrolase
13_1_20cm_4_scaffold_1647_9
unknown

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comp(8791..9084)
DNA (294bp) protein (98aa)

This feature has no annotations

13_1_20cm_4_scaffold_1647_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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9210..9815
DNA (606bp) protein (202aa)
LL-diaminopimelate aminotransferase apoenzyme (EC:2.6.1.83); K10206 LL-diaminopimelate aminotransferase [EC:2.6.1.83] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
LL-diaminopimelate aminotransferase (EC:2.6.1.83)
L,L-diaminopimelate aminotransferase id=4231234 bin=GWA2_Methylomirabilis_73_35 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_1647_11
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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comp(9939..10346)
DNA (408bp) protein (136aa)
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
Putative uncharacterized protein id=3778009 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_1_20cm_4_scaffold_1647_12
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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comp(10343..10585)
DNA (243bp) protein (81aa)
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
Putative uncharacterized protein id=3778011 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_1_20cm_4_scaffold_1647_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(10776..11018)
DNA (243bp) protein (81aa)
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] Tax=GWA2_Rokubacteria_73_35_curated
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha id=4231232 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_1647_14
unknown

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11387..11506
DNA (120bp) protein (40aa)

This feature has no annotations

13_1_20cm_4_scaffold_1647_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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11718..12716
DNA (999bp) protein (333aa)
aminodeoxychorismate lyase; K07082 UPF0755 protein Tax=GWA2_Rokubacteria_73_35_curated
aminodeoxychorismate lyase id=14627099 bin=bin7_NC10_sister species=Thermodesulfatator atlanticus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=bin7_NC10_sister organism_group=NC10
aminodeoxychorismate lyase
13_1_20cm_4_scaffold_1647_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12738..13409
DNA (672bp) protein (224aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
1-acyl-sn-glycerol-3-phosphate acyltransferases id=4231028 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
1-acyl-sn-glycerol-3-phosphate acyltransferase
13_1_20cm_4_scaffold_1647_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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14265..14684
DNA (420bp) protein (140aa)
argininosuccinate lyase; K01755 argininosuccinate lyase [EC:4.3.2.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Argininosuccinate lyase id=4801451 bin=GWC2_Methylomirabilis_70_16 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
argH; argininosuccinate lyase
13_1_20cm_4_scaffold_1647_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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14681..15757
DNA (1077bp) protein (359aa)
Fibronectin, type III Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Fibronectin, type III id=2164681 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
Fibronectin, type III
13_1_20cm_4_scaffold_1647_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

15793..17043
DNA (1251bp) protein (417aa)
lysA; diaminopimelate decarboxylase (EC:4.1.1.20); K01586 diaminopimelate decarboxylase [EC:4.1.1.20] Tax=GWA2_Rokubacteria_73_35_curated
lysA; diaminopimelate decarboxylase (EC:4.1.1.20)
Diaminopimelate decarboxylase id=2164678 bin=GWA2_Methylomirabilis_73_35 species=Leptospirillum ferrodiazotrophum genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_1647_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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17040..17825
DNA (786bp) protein (262aa)
dapA; dihydrodipicolinate synthase (EC:4.2.1.52) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
dapA; dihydrodipicolinate synthase (EC:4.2.1.52)
Dihydrodipicolinate synthase id=4801457 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Displaying 20 items

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