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13_1_20cm_4_scaffold_1817

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_1817_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2..1069)
DNA (1068bp) protein (356aa)
hypothetical protein; K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4960513 bin=GWC2_Methylomirabilis_70_24 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
sun protein
13_1_20cm_4_scaffold_1817_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(1076..1825)
DNA (750bp) protein (250aa)
fmt; methionyl-tRNA formyltransferase (EC:2.1.2.9); K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
fmt; methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase id=5019509 bin=GWA2_Methylomirabilis_73_35 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_1817_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1995..2390)
DNA (396bp) protein (132aa)
peptide deformylase; K01462 peptide deformylase [EC:3.5.1.88] Tax=GWA2_Rokubacteria_73_35_curated
peptide deformylase id=14625194 bin=bin7_NC10_sister species=Thioflavicoccus mobilis genus=Thioflavicoccus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
peptide deformylase
13_1_20cm_4_scaffold_1817_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2378..3040)
DNA (663bp) protein (221aa)
priA; primosomal protein N'; K04066 primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Primosomal protein N id=5019508 bin=GWA2_Methylomirabilis_73_35 species=Nitrolancetus hollandicus genus=Nitrolancetus taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
primosomal protein N'
13_1_20cm_4_scaffold_1817_5
Leishmania major, Leishmania, Kinetoplastida, Eukaryota

Not on your lists

3381..4109
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=Leishmania major RepID=E9AEK6_LEIMA
Uncharacterized protein {ECO:0000313|EMBL:CBZ12659.1}; TaxID=5664 species="Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania.;" source="Leishmania major.;"
hypothetical protein
13_1_20cm_4_scaffold_1817_6
unknown

Not on your lists

comp(4697..4918)
DNA (222bp) protein (74aa)

This feature has no annotations

13_1_20cm_4_scaffold_1817_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4968..6188)
DNA (1221bp) protein (407aa)
coaBC; coenzyme A biosynthesis bifunctional protein coaBC (EC:4.1.1.36 6.3.2.5); K13038 phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase [EC:4.1.1.36 6.3.2.5] Tax=GWA2_
coaBC; coenzyme A biosynthesis bifunctional protein coaBC (EC:4.1.1.36 6.3.2.5)
Coenzyme A biosynthesis bifunctional protein CoaBC id=3315417 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_1_20cm_4_scaffold_1817_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(6185..6400)
DNA (216bp) protein (72aa)
DNA-directed RNA polymerase subunit omega Tax=GWA2_Rokubacteria_73_35_curated
DNA-directed RNA polymerase subunit omega
DNA-directed RNA polymerase subunit omega id=3315419 bin=GWA2_Methylomirabilis_73_35 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_1817_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(6400..7014)
DNA (615bp) protein (205aa)
gmk; guanylate kinase (EC:2.7.4.8) Tax=GWA2_Rokubacteria_73_35_curated
gmk; guanylate kinase (EC:2.7.4.8)
Guanylate kinase id=3315421 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_1_20cm_4_scaffold_1817_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(7048..7920)
DNA (873bp) protein (291aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Putative uncharacterized protein id=3315427 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_1817_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

8047..9123
DNA (1077bp) protein (359aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Putative uncharacterized protein id=3315430 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein
13_1_20cm_4_scaffold_1817_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

9189..9995
DNA (807bp) protein (269aa)
ABC transporter ATP-binding protein; K02049 NitT/TauT family transport system ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ABC transporter ATP-binding protein; K02049 NitT/TauT family transport system ATP-binding protein id=14625186 bin=bin7_NC10_sister species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
ABC transporter ATP-binding protein
13_1_20cm_4_scaffold_1817_13
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

9992..10807
DNA (816bp) protein (272aa)
hypothetical protein; K02050 NitT/TauT family transport system permease protein Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein; K02050 NitT/TauT family transport system permease protein id=14625185 bin=bin7_NC10_sister species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_20cm_4_scaffold_1817_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10804..11175
DNA (372bp) protein (124aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_20cm_4_scaffold_1817_15
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11186..12094)
DNA (909bp) protein (303aa)
Beta-lactamase n=1 Tax=Oxalobacteraceae bacterium IMCC9480 RepID=F1VXA2_9BURK
Beta-lactamase {ECO:0000313|EMBL:KJB93805.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KAC
beta-lactamase
13_1_20cm_4_scaffold_1817_16
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12091..12366)
DNA (276bp) protein (92aa)
beta-lactamase n=1 Tax=Variovorax paradoxus RepID=UPI00037DF14D
AmpC protein {ECO:0000313|EMBL:BAQ48732.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticu
beta-lactamase
13_1_20cm_4_scaffold_1817_17
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(12436..12618)
DNA (183bp) protein (61aa)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen id=4646434 bin=GWA2_Methylomirabilis_73_35 species=Niastella koreensis genus=Niastella taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_1817_18
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

comp(12775..12987)
DNA (213bp) protein (71aa)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Tax=RBG_16_NC10_65_8_curated
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen id=4646430 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_1817_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

13185..13856
DNA (672bp) protein (224aa)
id=4485920 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
id=3068362 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_20cm_4_scaffold_1817_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13884..14453)
DNA (570bp) protein (190aa)
pyrE; orotate phosphoribosyltransferase (EC:2.4.2.10); K00762 orotate phosphoribosyltransferase [EC:2.4.2.10] Tax=GWA2_Rokubacteria_73_35_curated
Orotate phosphoribosyltransferase id=4815545 bin=GWA2_Methylomirabilis_73_35 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
orotate phosphoribosyltransferase
13_1_20cm_4_scaffold_1817_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(14450..14749)
DNA (300bp) protein (100aa)
orotidine-5'-phosphate decarboxylase (EC:4.1.1.23); K01591 orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
orotidine 5'-phosphate decarboxylase (EC:4.1.1.23)
Orotidine 5'-phosphate decarboxylase id=3102588 bin=GWC2_Methylomirabilis_70_16 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_20cm_4_scaffold_1817_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(14788..15024)
DNA (237bp) protein (79aa)
orotidine-5'-phosphate decarboxylase (EC:4.1.1.23); K01591 orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
orotidine-5'-phosphate decarboxylase (EC:4.1.1.23)
Orotidine 5'-phosphate decarboxylase id=4815544 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_1817_23
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(15014..15916)
DNA (903bp) protein (301aa)
carB; carbamoyl phosphate synthase, large subunit (EC:6.3.5.5) Tax=GWA2_Rokubacteria_73_35_curated
carB; carbamoyl phosphate synthase, large subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase large chain id=4815543 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Displaying 23 items

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