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13_1_20cm_4_scaffold_1908

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_1908_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(1..915)
DNA (915bp) protein (305aa)
ferredoxin Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative ferredoxin id=3980009 bin=GWC2_Methylomirabilis_70_16 species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ferredoxin
13_1_20cm_4_scaffold_1908_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

947..2434
DNA (1488bp) protein (496aa)
Amidase (EC:3.5.1.4); K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Amidase (EC:3.5.1.4)
Amidase id=4306251 bin=GWA2_Methylomirabilis_73_35 species=Pseudonocardia dioxanivorans genus=Pseudonocardia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_1908_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

2460..2870
DNA (411bp) protein (137aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=4306254 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_1908_4
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

2873..3217
DNA (345bp) protein (115aa)
hypothetical protein Tax=CSP1_6_Rokubacteria
hypothetical protein id=14627576 bin=bin7_NC10_sister species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_20cm_4_scaffold_1908_5
unknown

Not on your lists

3295..3591
DNA (297bp) protein (99aa)

This feature has no annotations

13_1_20cm_4_scaffold_1908_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(3652..4428)
DNA (777bp) protein (259aa)
methyltransferase type 11 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Methyltransferase type 11 id=4306261 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
methyltransferase type 11
13_1_20cm_4_scaffold_1908_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4425..4604)
DNA (180bp) protein (60aa)
Putative uncharacterized protein Tax=GWA2_Rokubacteria_73_35_curated
Putative uncharacterized protein id=4306265 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_1908_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4697..6520
DNA (1824bp) protein (608aa)
GntR family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Transcriptional regulator, GntR family with aminotransferase domain protein id=3741119 bin=GWF2_Methylomirabilis_70_14 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
GntR family transcriptional regulator
13_1_20cm_4_scaffold_1908_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

6630..7334
DNA (705bp) protein (235aa)
pyridoxal biosynthesis lyase PdxS; K06215 pyridoxine biosynthesis protein [EC:4.-.-.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Pyridoxal biosynthesis lyase PdxS id=2591425 bin=GWC2_Methylomirabilis_70_16 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
pyridoxal biosynthesis protein
13_1_20cm_4_scaffold_1908_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

7372..7974
DNA (603bp) protein (201aa)
glutamine amidotransferase subunit PdxT; K08681 glutamine amidotransferase [EC:2.6.-.-] Tax=GWA2_Rokubacteria_73_35_curated
Glutamine amidotransferase subunit PdxT id=2940470 bin=GWA2_Methylomirabilis_73_35 species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_1908_11
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

8017..8808
DNA (792bp) protein (264aa)
Alpha/beta hydrolase fold Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Alpha/beta hydrolase fold id=2940473 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Alpha/beta hydrolase fold
13_1_20cm_4_scaffold_1908_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

8905..10113
DNA (1209bp) protein (403aa)
porD-like; pyruvate synthase subunit delta (EC:1.2.7.1); K00171 pyruvate ferredoxin oxidoreductase, delta subunit [EC:1.2.7.1] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
porD-like; pyruvate synthase subunit delta (EC:1.2.7.1)
Orf c01004 protein id=2591423 bin=GWC2_Methylomirabilis_70_16 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_20cm_4_scaffold_1908_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

10126..11355
DNA (1230bp) protein (410aa)
pyruvate ferredoxin oxidoreductase subunit alpha; K00169 pyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.1] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
pyruvate ferredoxin oxidoreductase subunit alpha (EC:1.2.7.1)
Pyruvate ferredoxin oxidoreductase, alpha subunit id=2591422 bin=GWC2_Methylomirabilis_70_16 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_20cm_4_scaffold_1908_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

11368..12399
DNA (1032bp) protein (344aa)
pyruvate ferredoxin oxidoreductase subunit beta; K00170 pyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.1] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
pyruvate ferredoxin oxidoreductase subunit beta; K00170 pyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.1] id=24466814 bin=RBG_19FT_COMBO_GAL15_69_19 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate rbh
pyruvate ferredoxin oxidoreductase subunit beta (EC:1.2.7.1)
13_1_20cm_4_scaffold_1908_15
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

12533..13501
DNA (969bp) protein (323aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Putative uncharacterized protein id=1837243 bin=GWD2_Deltaproteobacteria_55_8 species=Methyloversatilis universalis genus=Methyloversatilis taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
13_1_20cm_4_scaffold_1908_16
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

13512..13973
DNA (462bp) protein (154aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
conserved membrane hypothetical protein id=14429967 bin=bin3_NC10 species=Bradyrhizobium sp. ORS 375 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
hypothetical protein
13_1_20cm_4_scaffold_1908_17
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

13977..14246
DNA (270bp) protein (90aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
hypothetical protein id=14626767 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Displaying 17 items

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