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13_1_20cm_4_scaffold_251

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_251_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2..1552)
DNA (1551bp) protein (517aa)
relA; GTP pyrophosphokinase (EC:2.7.6.5) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
relA; GTP pyrophosphokinase (EC:2.7.6.5) id=14627007 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
relA; GTP pyrophosphokinase (EC:2.7.6.5)
13_1_20cm_4_scaffold_251_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1595..2530)
DNA (936bp) protein (312aa)
secF; preprotein translocase subunit SecF; K03074 preprotein translocase subunit SecF Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
secF; preprotein translocase subunit SecF; K03074 preprotein translocase subunit SecF id=14627006 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Omnitrophica tax=bin7_NC10_sister organism_group=NC10
secF; preprotein translocase subunit SecF
13_1_20cm_4_scaffold_251_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(2684..4240)
DNA (1557bp) protein (519aa)
protein translocase subunit; K03072 preprotein translocase subunit SecD Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
protein translocase subunit; K03072 preprotein translocase subunit SecD id=14627005 bin=bin7_NC10_sister species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
protein translocase subunit
13_1_20cm_4_scaffold_251_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(4233..4577)
DNA (345bp) protein (115aa)
preprotein translocase, YajC subunit Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Preprotein translocase subunit YajC id=4319700 bin=GWA2_Methylomirabilis_73_35 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
yajC; preprotein translocase subunit YajC
13_1_20cm_4_scaffold_251_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(4605..5747)
DNA (1143bp) protein (381aa)
tgt; tRNA-guanine transglycosylase (queuine/archaeosine tRNA-ribosyltransferase) (EC:2.4.2.29) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
tgt; tRNA-guanine transglycosylase (queuine/archaeosine tRNA-ribosyltransferase) (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase id=4319701 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_251_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5860..6885)
DNA (1026bp) protein (342aa)
S-adenosylmethionine; K07568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
S-adenosylmethionine:tRNA ribosyltransferase-isomerase id=4319702 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
S-adenosylmethionine--tRNA ribosyltransferase-isomerase
13_1_20cm_4_scaffold_251_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7089..7430
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Azoarcus sp. KH32C RepID=H0Q0G3_9RHOO
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_1_20cm_4_scaffold_251_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7434..8282
DNA (849bp) protein (283aa)
iron permease FTR1; K07243 high-affinity iron transporter Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
iron permease FTR1; K07243 high-affinity iron transporter id=14630789 bin=bin9_gal15 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin9_gal15 organism_group=GAL15
high-affinity Fe2+/Pb2+ permease
13_1_20cm_4_scaffold_251_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8349..8681)
DNA (333bp) protein (111aa)
export-related chaperone CsaA; K06878 tRNA-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Export-related chaperone CsaA id=4284345 bin=GWC2_Methylomirabilis_70_16 species=Paracoccus denitrificans genus=Paracoccus taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
csaA; export-related chaperone CsaA
13_1_20cm_4_scaffold_251_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8943..10124)
DNA (1182bp) protein (394aa)
SpoIID/LytB domain-containing protein; K06381 stage II sporulation protein D Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
SpoIID/LytB domain protein id=4319706 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cell division protein, SpoIID family
13_1_20cm_4_scaffold_251_11
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10121..10345)
DNA (225bp) protein (75aa)
Uncharacterized protein n=2 Tax=Geobacter metallireducens RepID=Q39XM9_GEOMG
Uncharacterized protein {ECO:0000313|EMBL:ABB30995.1}; TaxID=269799 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter metallire
hypothetical protein
13_1_20cm_4_scaffold_251_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10342..11385)
DNA (1044bp) protein (348aa)
ruvB; Holliday junction DNA helicase RuvB; K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Holliday junction ATP-dependent DNA helicase RuvB id=4319707 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ruvB; Holliday junction DNA helicase RuvB
13_1_20cm_4_scaffold_251_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(11382..12032)
DNA (651bp) protein (217aa)
DNA recombination protein RuvA domain I; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12] Tax=GWA2_Rokubacteria_73_35_curated
DNA recombination protein RuvA domain I; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12] id=14626993 bin=bin7_NC10_sister species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
DNA recombination protein RuvA domain I
13_1_20cm_4_scaffold_251_14
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(12244..12783)
DNA (540bp) protein (180aa)
crossover junction endodeoxyribonuclease RuvC (EC:3.1.22.4); K01159 crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4] Tax=GWC2_Rokubacteria_70_16_curated
Crossover junction endodeoxyribonuclease RuvC id=4404045 bin=GWC2_Methylomirabilis_70_24 species=Pirellula staleyi genus=Pirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
crossover junction endodeoxyribonuclease RuvC
13_1_20cm_4_scaffold_251_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12731..13483)
DNA (753bp) protein (251aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Probable transcriptional regulatory protein DAMO_2401 id=4284351 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_20cm_4_scaffold_251_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13488..14474)
DNA (987bp) protein (329aa)
thioesterase superfamily protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Thioesterase superfamily protein id=3467151 bin=GWA2_Methylomirabilis_73_35 species=Vulcanisaeta moutnovskia genus=Vulcanisaeta taxon_order=Thermoproteales taxon_class=Thermoprotei phylum=Crenarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thioesterase superfamily protein
13_1_20cm_4_scaffold_251_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14632..16095)
DNA (1464bp) protein (488aa)
heme-binding protein A (Hemin-binding lipoprotein); K02035 peptide/nickel transport system substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Heme-binding protein A (Hemin-binding lipoprotein) id=3467128 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oligopeptide/dipeptide ABC transporter peptide-binding protein
Displaying 17 items

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