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13_1_20cm_4_scaffold_2532

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_2532_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2..922
DNA (921bp) protein (307aa)
purF; amidophosphoribosyltransferase (Glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPATase) (EC:2.4.2.14) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
purF; amidophosphoribosyltransferase (Glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPATase) (EC:2.4.2.14) id=14625428 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
purF; glutamine--phosphoribosylpyrophosphate amidotransferase
13_1_20cm_4_scaffold_2532_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

943..1974
DNA (1032bp) protein (344aa)
PurM; phosphoribosylaminoimidazole synthetase; K01933 phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] Tax=GWA2_Rokubacteria_73_35_curated
phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1)
Phosphoribosylformylglycinamidine cyclo-ligase id=1817203 bin=GWA2_Methylomirabilis_73_35 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_2532_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1971..2639
DNA (669bp) protein (223aa)
phosphoribosylglycinamide formyltransferase; K11175 phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] Tax=GWA2_Rokubacteria_73_35_curated
phosphoribosylglycinamide formyltransferase (EC:2.1.2.2)
Phosphoribosylglycinamide formyltransferase, folate-dependent id=4153845 bin=GWC2_Methylomirabilis_70_16 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_20cm_4_scaffold_2532_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

2639..4234
DNA (1596bp) protein (532aa)
purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (EC:2.1.2.3 3.5.4.10); K00602 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydro
bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; K00602 phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10] id=14625435 bin=bin7_NC10_sister species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
purH; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (EC:2.1.2.3)
13_1_20cm_4_scaffold_2532_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4249..5169
DNA (921bp) protein (307aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Tetratricopeptide TPR_2 repeat protein id=3389043 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_1_20cm_4_scaffold_2532_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

5252..6520
DNA (1269bp) protein (423aa)
phosphoribosylamine--glycine ligase (EC:6.3.4.13); K01945 phosphoribosylamine--glycine ligase [EC:6.3.4.13] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
phosphoribosylamine--glycine ligase (EC:6.3.4.13)
Phosphoribosylamine--glycine ligase id=3877308 bin=GWF2_Methylomirabilis_70_14 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_1_20cm_4_scaffold_2532_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6517..7041
DNA (525bp) protein (175aa)
hypothetical protein; K01588 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
phosphoribosylaminoimidazole carboxylase catalytic subunit (EC:4.1.1.21)
N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9RB42_AMMDK
13_1_20cm_4_scaffold_2532_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

7057..7530
DNA (474bp) protein (158aa)
translation factor; K07566 tRNA threonylcarbamoyladenosine biosynthesis protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative translation factor id=4621962 bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
translation factor
13_1_20cm_4_scaffold_2532_9
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

7580..8137
DNA (558bp) protein (186aa)
molybdopterin-guanine dinucleotide biosynthesis protein A Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Molybdenum cofactor guanylyltransferase id=4621961 bin=GWA2_Methylomirabilis_73_35 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
molybdopterin-guanine dinucleotide biosynthesis protein A
13_1_20cm_4_scaffold_2532_10
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

8225..9454
DNA (1230bp) protein (410aa)
thiI; thiamine biosynthesis protein thiI Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Probable tRNA sulfurtransferase id=4621862 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thiI; thiamine biosynthesis protein thiI
13_1_20cm_4_scaffold_2532_11
bacterium YEK0313, Bacteria

Not on your lists

9578..10867
DNA (1290bp) protein (430aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00037E66A0 rbh
Esterase EstB {ECO:0000313|EMBL:CEJ15156.1}; Flags: Precursor;; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
beta-lactamase
13_1_20cm_4_scaffold_2532_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

10992..11462
DNA (471bp) protein (157aa)
RpiB/LacA/LacB family sugar-phosphate isomerase (EC:5.3.1.6); K01808 ribose 5-phosphate isomerase B [EC:5.3.1.6] Tax=GWA2_Rokubacteria_73_35_curated
Sugar-phosphate isomerase, RpiB/LacA/LacB family id=4621857 bin=GWA2_Methylomirabilis_73_35 species=Clostridium thermocellum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ribose 5-phosphate isomerase B
13_1_20cm_4_scaffold_2532_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

11446..12072
DNA (627bp) protein (209aa)
glyA; serine hydroxymethyltransferase; K00600 glycine hydroxymethyltransferase [EC:2.1.2.1] Tax=GWA2_Rokubacteria_73_35_curated
glyA; serine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase id=4621854 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_2532_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

12030..12569
DNA (540bp) protein (180aa)
glyA; Serine hydroxymethyltransferase (glyA) (EC:2.1.2.1) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
glyA2; serine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase id=4621854 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_2532_15
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

12586..13092
DNA (507bp) protein (169aa)
nrdR; transcriptional regulator NrdR; K07738 transcriptional repressor NrdR Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Transcriptional repressor NrdR id=3366426 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
nrdR; NrdR family transcriptional regulator
13_1_20cm_4_scaffold_2532_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

13460..14323
DNA (864bp) protein (288aa)
cobalamin B12-binding/Radical SAM family protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
cobalamin B12-binding/Radical SAM family protein id=14627517 bin=bin7_NC10_sister species=Leptospirillum ferriphilum genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
cobalamin B12-binding/Radical SAM family
Displaying 16 items

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