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13_1_20cm_4_scaffold_300

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_300_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(253..1080)
DNA (828bp) protein (276aa)
rhomboid family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
rhomboid family protein id=14431019 bin=bin3_NC10 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=bin3_NC10 organism_group=NC10
protease
13_1_20cm_4_scaffold_300_2
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(1070..1381)
DNA (312bp) protein (104aa)
hypothetical protein; K09862 hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
DNA gyrase inhibitor YacG id=3122077 bin=GWF2_Methylomirabilis_70_14 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_300_3
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

1406..3889
DNA (2484bp) protein (828aa)
potassium transporter Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
K(+)-insensitive pyrophosphate-energized proton pump id=3585892 bin=GWF2_Methylomirabilis_70_14 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
potassium transporter
13_1_20cm_4_scaffold_300_4
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

3897..4523
DNA (627bp) protein (209aa)
dedA; protein dedA (Protein DSG-1) Tax=GWC2_Rokubacteria_70_16_curated
Protein dedA (Protein DSG-1) id=3212379 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
dedA; protein dedA (Protein DSG-1)
13_1_20cm_4_scaffold_300_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

4610..5389
DNA (780bp) protein (260aa)
lipid A biosynthesis acyltransferase; K02517 lipid A biosynthesis lauroyl acyltransferase [EC:2.3.1.-] Tax=GWA2_Rokubacteria_73_35_curated
Lipid A biosynthesis acyltransferase id=5027500 bin=GWA2_Methylomirabilis_73_35 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
lipid A biosynthesis acyltransferase
13_1_20cm_4_scaffold_300_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5386..6030
DNA (645bp) protein (215aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=5027499 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_300_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6053..6448)
DNA (396bp) protein (132aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14627385 bin=bin7_NC10_sister species=Pirellula staleyi genus=Pirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=bin7_NC10_sister organism_group=NC10
13_1_20cm_4_scaffold_300_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

6923..8227
DNA (1305bp) protein (435aa)
soluble lytic murein transglycosylase Tax=GWA2_Rokubacteria_73_35_curated
Soluble lytic murein transglycosylase id=5027497 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
Membrane-bound lytic murein transglycosylase D
13_1_20cm_4_scaffold_300_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(8388..9272)
DNA (885bp) protein (295aa)
ribonuclease BN; K07058 membrane protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Ribonuclease BN id=5027495 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ribonuclease BN family protein
13_1_20cm_4_scaffold_300_10
Rubinisphaera brasiliensis, Rubinisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(9370..10011)
DNA (642bp) protein (214aa)
Methyltransferase type 11 n=1 Tax=Planctomyces brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448) RepID=F0SQU4_PLABD
Methyltransferase type 11 {ECO:0000313|EMBL:ADY60165.1}; TaxID=756272 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rubinisphaera.;" source="Rubinisphaera bra
methyltransferase type 11
13_1_20cm_4_scaffold_300_11
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10037..10804)
DNA (768bp) protein (256aa)
Demethylmenaquinone methyltransferase {ECO:0000313|EMBL:ABM94295.1}; EC=2.1.1.- {ECO:0000313|EMBL:ABM94295.1};; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Met
demethylmenaquinone methyltransferase (EC:2.1.1.-)
Demethylmenaquinone methyltransferase n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SFF6_METPP
13_1_20cm_4_scaffold_300_12
Shewanella loihica, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10801..11397)
DNA (597bp) protein (199aa)
hypothetical protein n=1 Tax=SAR324 cluster bacterium SCGC AAA240-J09 RepID=UPI0002E5E425
Uncharacterized protein {ECO:0000313|EMBL:ABO25379.1}; TaxID=323850 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewanella loihica (s
hypothetical protein
13_1_20cm_4_scaffold_300_trna_1
unknown

Not on your lists

11535..11628
DNA (94bp)
transferRNA
13_1_20cm_4_scaffold_300_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

11637..12023
DNA (387bp) protein (129aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=14627381 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_20cm_4_scaffold_300_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12001..12495
DNA (495bp) protein (165aa)
id=2650396 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=4163878 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_20cm_4_scaffold_300_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

12500..12784
DNA (285bp) protein (95aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein id=3372626 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_300_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12774..14186
DNA (1413bp) protein (471aa)
L-seryl-tRNA(Sec) selenium transferase (EC:2.9.1.1); K01042 L-seryl-tRNA(Ser) seleniumtransferase [EC:2.9.1.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
L-seryl-tRNA(Sec) selenium transferase (EC:2.9.1.1)
L-seryl-tRNA(Sec) selenium transferase id=3372624 bin=GWA2_Methylomirabilis_73_35 species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_1_20cm_4_scaffold_300_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14597..16288
DNA (1692bp) protein (564aa)
selenocysteine-specific translation elongation factor (EC:2.7.7.4); K03833 selenocysteine-specific elongation factor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
selenocysteine-specific translation elongation factor (EC:2.7.7.4); K03833 selenocysteine-specific elongation factor id=14627377 bin=bin7_NC10_sister species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=bin7_NC10_sister organism_group=NC10
selenocysteine-specific translation elongation factor (EC:2.7.7.4)
13_1_20cm_4_scaffold_300_18
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

16326..16517
DNA (192bp) protein (64aa)
twin-arginine translocation protein, TatA/E family subunit; K03116 sec-independent protein translocase protein TatA Tax=GWC2_Rokubacteria_70_16_curated
Sec-independent protein translocase protein TatA id=4006883 bin=GWC2_Methylomirabilis_70_16 species=Prosthecochloris aestuarii genus=Prosthecochloris taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_20cm_4_scaffold_300_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

16606..17202
DNA (597bp) protein (199aa)
Uncharacterized protein Tax=GWA2_Rokubacteria_73_35_curated
Uncharacterized protein id=3372452 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_300_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17291..20119
DNA (2829bp) protein (943aa)
ileS; isoleucine tRNA synthetase (EC:6.1.1.5) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ileS; isoleucine tRNA synthetase (EC:6.1.1.5)
Isoleucine--tRNA ligase id=4006793 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_20cm_4_scaffold_300_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

20158..20652
DNA (495bp) protein (165aa)
lspA; lipoprotein signal peptidase (EC:3.4.23.36); K03101 signal peptidase II [EC:3.4.23.36] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Lipoprotein signal peptidase id=4006792 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
peptidase A8
13_1_20cm_4_scaffold_300_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

20712..21593
DNA (882bp) protein (294aa)
RluA family pseudouridine synthase; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.-)
pseudouridine synthase id=4608907 bin=GWC2_Methylomirabilis_70_24 species=Sporolactobacillus inulinus genus=Sporolactobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_20cm_4_scaffold_300_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

21783..23159
DNA (1377bp) protein (459aa)
glmU; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; K04042 bifunctional UDP-N-acetylglucosamine pyrophosphorylase / Glucosamine-1-phosphate
UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase id=4608909 bin=GWC2_Methylomirabilis_70_24 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good rbh
UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase
13_1_20cm_4_scaffold_300_24
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

23162..25000
DNA (1839bp) protein (613aa)
glmS; L-glutamine:D-fructose-6-phosphate aminotransferase (EC:2.6.1.16) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
glmS; L-glutamine:D-fructose-6-phosphate aminotransferase (EC:2.6.1.16)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] id=4783126 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_1_20cm_4_scaffold_300_25
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

25556..28786
DNA (3231bp) protein (1077aa)
pcrA; ATP-dependent DNA helicase PcrA (EC:3.6.1.-) Tax=GWA2_Rokubacteria_73_35_curated
pcrA; ATP-dependent DNA helicase PcrA (EC:3.6.1.-)
ATP-dependent DNA helicase PcrA id=4783127 bin=GWA2_Methylomirabilis_73_35 species=Clostridium acidurici genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_1_20cm_4_scaffold_300_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

28877..29164
DNA (288bp) protein (96aa)
gatC; glutamyl-tRNA(Gln) amidotransferase subunit C (EC:6.3.5.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
gatC; glutamyl-tRNA(Gln) amidotransferase subunit C (EC:6.3.5.-)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C id=4608915 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_20cm_4_scaffold_300_27
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29391..29684)
DNA (294bp) protein (98aa)
Uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
Uncharacterized protein id=3779679 bin=GWA2_Methylomirabilis_73_35 species=Zea mays genus=Zea taxon_order=Poales taxon_class=Liliopsida phylum=Streptophyta tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_300_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

29753..30481
DNA (729bp) protein (243aa)
gatA; glutamyl-tRNA(Gln) amidotransferase subunit A (Glu-ADT subunit A) (EC:6.3.5.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
gatA; glutamyl-tRNA(Gln) amidotransferase subunit A (Glu-ADT subunit A) (EC:6.3.5.-) id=14627415 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
gatA; glutamyl-tRNA(gln) amidotransferase subunit A (EC:6.3.5.-)
13_1_20cm_4_scaffold_300_29
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

30552..30656
DNA (105bp) protein (35aa)
gatB; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (Asp/Glu-ADT subunit B) (EC:6.3.5.-) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
gatB; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (Asp/Glu-ADT subunit B) (EC:6.3.5.-) id=14627414 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
gatB; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (Asp/Glu-ADT subunit B) (EC:6.3.5.-)
Displaying 30 items

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