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13_1_20cm_4_scaffold_4474

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_4474_1
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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1..567
DNA (567bp) protein (189aa)
cytochrome c class I Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Cytochrome c id=3662435 bin=GWA2_Methylomirabilis_73_35 species=Phenylobacterium zucineum genus=Phenylobacterium taxon_order=Caulobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cytochrome c, class I
13_1_20cm_4_scaffold_4474_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

657..2102
DNA (1446bp) protein (482aa)
4Fe-4S ferredoxin iron-sulfur binding domain protein n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L4B5_THERP
4Fe-4S ferredoxin Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
4Fe-4S ferredoxin
13_1_20cm_4_scaffold_4474_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2099..4930
DNA (2832bp) protein (944aa)
Formate dehydrogenase n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L4B4_THERP rbh
formate dehydrogenase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
formate dehydrogenase
13_1_20cm_4_scaffold_4474_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

5045..5518
DNA (474bp) protein (158aa)
sulfur oxidation protein SoxY Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=4841179 bin=GWA2_Methylomirabilis_73_35 species=Xanthobacter autotrophicus genus=Xanthobacter taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sulfur oxidation protein SoxY
13_1_20cm_4_scaffold_4474_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

5524..5856
DNA (333bp) protein (111aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Sulfur compound chelating protein SoxZ id=4841180 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Magnetococcus taxon_order=Magnetococcales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sulfur compound chelating protein SoxZ
13_1_20cm_4_scaffold_4474_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

5868..7178
DNA (1311bp) protein (437aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=4740848 bin=GWC2_Methylomirabilis_70_16 species=Halorhodospira halophila genus=Halorhodospira taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
hypothetical protein
13_1_20cm_4_scaffold_4474_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

7269..8957
DNA (1689bp) protein (563aa)
h16_A3563; 5'-nucleotidase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
5'-Nucleotidase domain protein id=4740847 bin=GWC2_Methylomirabilis_70_16 species=Achromobacter xylosoxidans genus=Achromobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
5'-nucleotidase
13_1_20cm_4_scaffold_4474_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8920..9861)
DNA (942bp) protein (314aa)
LysR family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
LysR family transcriptional regulator id=3087830 bin=GWC2_Methylomirabilis_70_16 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
LysR family transcriptional regulator
13_1_20cm_4_scaffold_4474_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

10000..10164
DNA (165bp) protein (55aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein id=4841183 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_4474_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10179..11585
DNA (1407bp) protein (469aa)
PEP phosphonomutase-related enzyme; K01637 isocitrate lyase [EC:4.1.3.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
aceA; isocitrate lyase (EC:2.7.8.23)
Isocitrate lyase id=3087646 bin=GWC2_Methylomirabilis_70_16 species=Haladaptatus paucihalophilus genus=Haladaptatus taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_20cm_4_scaffold_4474_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11756..13579
DNA (1824bp) protein (608aa)
fumarate reductase, or succinate dehydrogenase, flavoprotein subunit (EC:1.3.99.1); K00244 fumarate reductase flavoprotein subunit [EC:1.3.99.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
succinate dehydrogenase flavoprotein subunit (EC:1.3.99.1)
Putative succinate dehydrogenase flavoprotein subunit id=4740802 bin=GWC2_Methylomirabilis_70_16 species=Bordetella petrii genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
13_1_20cm_4_scaffold_4474_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13595..13906)
DNA (312bp) protein (104aa)
Redoxin domain protein Tax=GWA2_Rokubacteria_73_35_curated
Redoxin domain protein id=4646441 bin=GWA2_Methylomirabilis_73_35 species=Oceaniovalibus guishaninsula genus=Oceaniovalibus taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen
13_1_20cm_4_scaffold_4474_13
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(13925..14134)
DNA (210bp) protein (70aa)
putative thiol-disulfide oxidoreductase Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
Thioredoxin family protein id=4646438 bin=GWA2_Methylomirabilis_73_35 species=mine drainage metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thioredoxin family protein
Displaying 13 items

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