ggKbase home page

13_1_20cm_4_scaffold_5109

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_5109_1
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

3..395
DNA (393bp) protein (131aa)
dppC; PepT family ABC transporter permease Tax=GWA2_Rokubacteria_70_23_curated
ABC-type transporter, permease component: PepT family id=3677746 bin=GWF2_Methylomirabilis_70_14 species=Alcanivorax dieselolei genus=Alcanivorax taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dppC; PepT family ABC transporter permease
13_1_20cm_4_scaffold_5109_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

703..1731
DNA (1029bp) protein (343aa)
Uncharacterized protein n=1 Tax=Deinococcus maricopensis (strain DSM 21211 / LMG 22137 / NRRL B-23946 / LB-34) RepID=E8U5P9_DEIML
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein
13_1_20cm_4_scaffold_5109_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1728..2069
DNA (342bp) protein (114aa)
id=14626173 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=14626173 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_20cm_4_scaffold_5109_4
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

2120..2695
DNA (576bp) protein (192aa)
HAD-superfamily hydrolase; K07025 putative hydrolase of the HAD superfamily Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
hypothetical protein SgloC_26550 id=4527567 bin=GWC2_Methylomirabilis_70_16 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_20cm_4_scaffold_5109_5
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

2692..3693
DNA (1002bp) protein (334aa)
TrkA-N domain-containing protein Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
TrkA-N id=14626172 bin=bin7_NC10_sister species=Leeia oryzae genus=Leeia taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
potassium transporter TrkA
13_1_20cm_4_scaffold_5109_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3680..3868)
DNA (189bp) protein (63aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_20cm_4_scaffold_5109_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4098..4703)
DNA (606bp) protein (202aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=2322389 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_5109_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5241..8774
DNA (3534bp) protein (1178aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Adenylate/guanylate cyclase family protein,transcriptional regulatory protein,putative transcriptional regulator id=3398297 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium sp. WSM1253 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
adenylate cyclase
13_1_20cm_4_scaffold_5109_9
unknown

Not on your lists

comp(8766..8939)
DNA (174bp) protein (58aa)

This feature has no annotations

13_1_20cm_4_scaffold_5109_10
unknown

Not on your lists

comp(8966..9118)
DNA (153bp) protein (51aa)

This feature has no annotations

13_1_20cm_4_scaffold_5109_11
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(9161..10225)
DNA (1065bp) protein (355aa)
hypothetical protein; K01955 carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
putative carbamoylphosphate synthase large subunit, short form id=3398306 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Candidatus Saccharibacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein
13_1_20cm_4_scaffold_5109_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10299..11219)
DNA (921bp) protein (307aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=3398311 bin=GWA2_Methylomirabilis_73_35 species=Bacillus thuringiensis genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Displaying 12 items

View Taxonomy