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13_1_20cm_4_scaffold_5565

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_5565_1
unknown

Not on your lists

comp(3..164)
DNA (162bp) protein (54aa)

This feature has no annotations

13_1_20cm_4_scaffold_5565_2
unknown

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295..507
DNA (213bp) protein (71aa)

This feature has no annotations

13_1_20cm_4_scaffold_5565_3
unknown

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594..773
DNA (180bp) protein (60aa)

This feature has no annotations

13_1_20cm_4_scaffold_5565_4
R_Gammaproteobacteria_56_15, Gammaproteobacteria, Proteobacteria, Bacteria

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1028..1528
DNA (501bp) protein (167aa)
rsbT; switch protein/serine-threonine kinase; controls the activity of the piezosome (stressosome) (EC:2.7.11.1)
hypothetical protein n=1 Tax=Burkholderia sp. JPY347 RepID=UPI0003707C03
anti-sigma regulatory factor, serine/threonine protein kinase Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_56_15_curated
13_1_20cm_4_scaffold_5565_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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1689..3095
DNA (1407bp) protein (469aa)
lipA; lipoyl synthase (EC:2.8.1.8); K03644 lipoic acid synthetase [EC:2.8.1.8] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
lipA; lipoyl synthase (EC:2.8.1.8)
Lipoyl synthase id=4828152 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
13_1_20cm_4_scaffold_5565_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

3086..3544
DNA (459bp) protein (153aa)
nuoB; NADH dehydrogenase subunit B; K00331 NADH-quinone oxidoreductase subunit B [EC:1.6.5.3] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
NADH dehydrogenase subunit B (EC:1.6.99.5)
NADH-quinone oxidoreductase subunit B id=2992145 bin=GWF2_Methylomirabilis_70_14 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_5565_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

3544..4041
DNA (498bp) protein (166aa)
NADH (or F420H2) dehydrogenase subunit C; K00332 NADH-quinone oxidoreductase subunit C [EC:1.6.5.3] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
nuoC1; NADH dehydrogenase (ubiquinone) (EC:1.6.5.3); K00332 NADH-quinone oxidoreductase subunit C [EC:1.6.5.3] id=14627531 bin=bin7_NC10_sister species=Nitrospina sp. SCGC AAA288-L16 genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=bin7_NC10_sister organism_group=NC10
NADH (or F420H2) dehydrogenase subunit C
13_1_20cm_4_scaffold_5565_8
R_Rokubacteria_69_13, Rokubacteria, Bacteria

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comp(4331..4474)
DNA (144bp) protein (48aa)
Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
13_1_20cm_4_scaffold_5565_9
unknown

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comp(4484..4747)
DNA (264bp) protein (88aa)

This feature has no annotations

13_1_20cm_4_scaffold_5565_10
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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4771..5286
DNA (516bp) protein (172aa)
NADH dehydrogenase subunit D (EC:1.6.99.5)
NADH dehydrogenase I subunit D Tax=GWA2_Rokubacteria_70_23_curated
NADH-quinone oxidoreductase subunit D id=2992135 bin=GWF2_Methylomirabilis_70_14 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_5565_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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5283..5840
DNA (558bp) protein (186aa)
NADH-quinone oxidoreductase subunit E; K00334 NADH-quinone oxidoreductase subunit E [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
nuoE; NADH dehydrogenase (ubiquinone) (EC:1.6.5.3)
NADH dehydrogenase I subunit E id=3990310 bin=GWC2_Methylomirabilis_70_16 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_20cm_4_scaffold_5565_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5837..7117
DNA (1281bp) protein (427aa)
NADH-quinone oxidoreductase subunit F (EC:1.6.99.5); K00335 NADH-quinone oxidoreductase subunit F [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
nuoF; NADH-quinone oxidoreductase subunit F (NADH dehydrogenase I, chain F) (NDH-1, chain F) (EC:1.6.5.3 1.6.99.5) id=14627534 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
NADH dehydrogenase I subunit F
13_1_20cm_4_scaffold_5565_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7110..8747
DNA (1638bp) protein (546aa)
Molybdopterin oxidoreductase Fe4S4 region Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NADH dehydrogenase I, G subunit (75 kDa) id=3990316 bin=GWC2_Methylomirabilis_70_16 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
Molybdopterin oxidoreductase Fe4S4 region
13_1_20cm_4_scaffold_5565_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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8744..9841
DNA (1098bp) protein (366aa)
nuoH_[H]; NADH-ubiquinone oxidoreductase chain H (EC:1.6.5.3) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
nuoH; NADH-quinone oxidoreductase chain H (EC:1.6.99.5); K00337 NADH-quinone oxidoreductase subunit H [EC:1.6.5.3] id=14627536 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Omnitrophica tax=bin7_NC10_sister organism_group=NC10 rbh
nuoH_[H]; NADH-ubiquinone oxidoreductase chain H (EC:1.6.5.3)
13_1_20cm_4_scaffold_5565_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9838..10134
DNA (297bp) protein (99aa)
4Fe-4S ferredoxin; K00338 NADH-quinone oxidoreductase subunit I [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
4Fe-4S ferredoxin; K00338 NADH-quinone oxidoreductase subunit I [EC:1.6.5.3] id=14627537 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Omnitrophica tax=bin7_NC10_sister organism_group=NC10
4Fe-4S ferredoxin
Displaying 15 items

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