ggKbase home page

13_1_20cm_4_scaffold_5837

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_5837_1
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(182..1324)
DNA (1143bp) protein (381aa)
hypothetical protein n=1 Tax=Pseudomonas pyrrocinia RepID=UPI00031AB7CB
putative hydrolase Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
putative hydrolase
13_1_20cm_4_scaffold_5837_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1834..2421)
DNA (588bp) protein (196aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4221498 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_5837_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(2437..3489)
DNA (1053bp) protein (351aa)
putative 2-dehydropantoate 2-reductase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
2-dehydropantoate 2-reductase id=4221488 bin=GWA2_Methylomirabilis_73_35 species=Variovorax sp. CF313 genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_5837_4
RIFOXYD12_FULL_Burkholderiales_59_19_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3518..4312)
DNA (795bp) protein (265aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Thauera sp. 63 RepID=N6Y626_9RHOO
short-chain dehydrogenase/reductase SDR Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
short-chain dehydrogenase/reductase SDR
13_1_20cm_4_scaffold_5837_5
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5099..6241)
DNA (1143bp) protein (381aa)
hypothetical protein n=1 Tax=Pseudomonas pyrrocinia RepID=UPI00031AB7CB
amidohydrolase 2 Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
putative hydrolase
13_1_20cm_4_scaffold_5837_6
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(6374..6913)
DNA (540bp) protein (180aa)
CHRD domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
hypothetical protein id=14630359 bin=bin8_Chloro species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Crenarchaeota tax=bin8_Chloro organism_group=Chloroflexi
13_1_20cm_4_scaffold_5837_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(7042..7968)
DNA (927bp) protein (309aa)
Luciferase-like, subgroup n=1 Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WPT3_KYRT2
luciferase-like monooxygenase Tax=GWA2_Rokubacteria_73_35_curated
luciferase-like protein
13_1_20cm_4_scaffold_5837_8
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

8018..9097
DNA (1080bp) protein (360aa)
luciferase-like monooxygenase (EC:1.14.-.-); K00517 [EC:1.14.-.-] Tax=CSP1_6_Rokubacteria
luciferase-like monooxygenase (EC:1.14.-.-); K00517 [EC:1.14.-.-] id=14625984 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin7_NC10_sister organism_group=NC10
luxA2; alkanal monooxygenase
13_1_20cm_4_scaffold_5837_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

9120..10274
DNA (1155bp) protein (385aa)
chromate transporter chromate ion transporter (CHR) family; K07240 chromate transporter Tax=GWA2_Rokubacteria_73_35_curated
Chromate transporter, chromate ion transporter (CHR) family id=4243642 bin=GWA2_Methylomirabilis_73_35 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
chromate transporter chromate ion transporter (CHR) family
13_1_20cm_4_scaffold_5837_10
CSP1_5_NC10, NC10, Bacteria

Not on your lists

10790..11746
DNA (957bp) protein (319aa)
putative hydrolase transmembrane protein Tax=CSP1_5_NC10
putative hydrolase transmembrane protein id=14429957 bin=bin3_NC10 species=Herbaspirillum sp. JC206 genus=Herbaspirillum taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10 rbh
putative hydrolase transmembrane protein
13_1_20cm_4_scaffold_5837_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11773..12087
DNA (315bp) protein (105aa)
dioxygenase, ferredoxin subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Dioxygenase, ferredoxin subunit id=4745862 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dioxygenase, ferredoxin subunit
13_1_20cm_4_scaffold_5837_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12431..13048
DNA (618bp) protein (206aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=4745859 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_5837_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13391..14092)
DNA (702bp) protein (234aa)
putative phenylacetic acid degradation protein; K02609 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA [EC:1.14.13.149] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
putative phenylacetic acid degradation protein; K02609 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA [EC:1.14.13.149] id=14628063 bin=bin7_NC10_sister species=Bacteriovorax marinus genus=Bacteriovorax taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
putative phenylacetic acid degradation protein
13_1_20cm_4_scaffold_5837_14
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(14124..15416)
DNA (1293bp) protein (431aa)
phenylacetate--CoA ligase (EC:6.2.1.30); K01912 phenylacetate-CoA ligase [EC:6.2.1.30] Tax=CSP1_6_Rokubacteria
phenylacetate--CoA ligase (EC:6.2.1.30); K01912 phenylacetate-CoA ligase [EC:6.2.1.30] id=14628064 bin=bin7_NC10_sister species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
phenylacetate--CoA ligase (EC:6.2.1.30)
13_1_20cm_4_scaffold_5837_15
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15413..15715)
DNA (303bp) protein (101aa)
Uncharacterized protein {ECO:0000313|EMBL:KFA91222.1}; TaxID=1406225 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cy
13_1_20cm_4_scaffold_5837_16
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(15712..15972)
DNA (261bp) protein (87aa)
id=14628038 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
id=14628038 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_20cm_4_scaffold_5837_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15969..16931)
DNA (963bp) protein (321aa)
group 1 glycosyl transferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycosyl transferase group 1 id=4745855 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glycosyltransferase
13_1_20cm_4_scaffold_5837_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(17515..18075)
DNA (561bp) protein (187aa)
tRNA-i(6)A37 thiotransferase enzyme MiaB; K06168 bifunctional enzyme involved in thiolation and methylation of tRNA Tax=GWA2_Rokubacteria_73_35_curated
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB id=4891635 bin=GWC2_Methylomirabilis_70_16 species=Methyloversatilis universalis genus=Methyloversatilis taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
MiaB2; (dimethylallyl)adenosine tRNA methylthiotransferase
Displaying 18 items

View Taxonomy