ggKbase home page

13_1_20cm_4_scaffold_2168_8

Organism: 13_1_20CM_4_Rokubacteria_70_14

partial RP 35 / 55 MC: 2 BSCG 36 / 51 MC: 1 ASCG 10 / 38
Location: 7090..7371

Top 3 Functional Annotations

Value Algorithm Source
histone family protein DNA-binding protein; K04764 integration host factor subunit alpha Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated UNIPROT
DB: UniProtKB
  • Identity: 93.3
  • Coverage: 90.0
  • Bit_score: 171
  • Evalue 5.40e-40
Integration host factor, alpha subunit id=4853973 bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis similarity UNIREF
DB: UNIREF100
  • Identity: 93.3
  • Coverage: 89.0
  • Bit_score: 168
  • Evalue 2.50e-39
ihfA-1; integration host factor subunit alpha similarity KEGG
DB: KEGG
  • Identity: 54.9
  • Coverage: 91.0
  • Bit_score: 102
  • Evalue 4.80e-20

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

R_Rokubacteria_73_56 → Rokubacteria → Bacteria

Sequences

DNA sequence
Length: 282
GTGACGAAGAACGATCTGGTCAATGCCGTCGCGGCCCACGGGCTCTCCAAGCGCCAGTCGTCATCGGTCGTCGAGTCCGTCTTCGACATCATCTTTCGCTGCTTCGAGCGGGGTGAGGACGTCAAGATCGTCGGCTTCGGGCACTTCCGCATCCGGAAGAAGGCCTCACGGCGTGGACGGAATCCTCAGACGGGCGAGTCGATCGAGATCACGGCCCGTCGGGTGCTCACTTTCAAGCCGAGCAAGGGGCTCAAGCAACGGATCAACAGCGCCACGCCGTAA
PROTEIN sequence
Length: 94
VTKNDLVNAVAAHGLSKRQSSSVVESVFDIIFRCFERGEDVKIVGFGHFRIRKKASRRGRNPQTGESIEITARRVLTFKPSKGLKQRINSATP*