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13_1_20cm_4_scaffold_2168

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_2168_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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1..945
DNA (945bp) protein (315aa)
tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.75); K00791 tRNA dimethylallyltransferase [EC:2.5.1.75] Tax=GWA2_Rokubacteria_73_35_curated
tRNA dimethylallyltransferase id=4853966 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_2168_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

942..2231
DNA (1290bp) protein (430aa)
GTP-binding protein HflX; K03665 GTP-binding protein HflX Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
GTPase HflX id=4853967 bin=GWA2_Methylomirabilis_73_35 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
GTP-binding protein HflX
13_1_20cm_4_scaffold_2168_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2242..2808
DNA (567bp) protein (189aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase id=4853968 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
13_1_20cm_4_scaffold_2168_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

3255..4010
DNA (756bp) protein (252aa)
PDZ domain-containing protein Tax=GWA2_Rokubacteria_73_35_curated
Putative uncharacterized protein id=4853969 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_2168_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

4024..5250
DNA (1227bp) protein (409aa)
hypothetical protein n=1 Tax=Geopsychrobacter electrodiphilus RepID=UPI00036FCDF2
small GTP-binding protein domain-containing protein; K03977 GTP-binding protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
GTP-binding protein engA
13_1_20cm_4_scaffold_2168_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5247..6116
DNA (870bp) protein (290aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=4853971 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein
13_1_20cm_4_scaffold_2168_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

6124..7080
DNA (957bp) protein (319aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Blr0521 protein id=4853972 bin=GWA2_Methylomirabilis_73_35 species=Tropheryma whipplei genus=Tropheryma taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DedD protein
13_1_20cm_4_scaffold_2168_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7090..7371
DNA (282bp) protein (94aa)
histone family protein DNA-binding protein; K04764 integration host factor subunit alpha Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Integration host factor, alpha subunit id=4853973 bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ihfA-1; integration host factor subunit alpha
13_1_20cm_4_scaffold_2168_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7440..7733
DNA (294bp) protein (98aa)
MerR family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Transcriptional regulator, MerR family id=4853974 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
regulatory protein MerR
13_1_20cm_4_scaffold_2168_trna_1
unknown

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7772..7845
DNA (74bp)
transferRNA
13_1_20cm_4_scaffold_2168_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7778..8488
DNA (711bp) protein (237aa)
surE; stationary phase survival protein SurE; K03787 5'-nucleotidase [EC:3.1.3.5] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
5'-nucleotidase SurE id=4853975 bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
surE; 5'(3')-nucleotidase/polyphosphatase
13_1_20cm_4_scaffold_2168_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8488..9144
DNA (657bp) protein (219aa)
protein-L-isoaspartate O-methyltransferase; K00573 protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
protein-L-isoaspartate O-methyltransferase (EC:2.1.1.77)
Protein-L-isoaspartate O-methyltransferase 1 id=4853976 bin=GWA2_Methylomirabilis_73_35 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_2168_trna_2
unknown

Not on your lists

9175..9248
DNA (74bp)
transferRNA
13_1_20cm_4_scaffold_2168_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

9320..9619
DNA (300bp) protein (100aa)
acylphosphatase; K01512 acylphosphatase [EC:3.6.1.7] Tax=GWA2_Rokubacteria_73_35_curated
Acylphosphatase id=4853977 bin=GWA2_Methylomirabilis_73_35 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acylphosphatase
13_1_20cm_4_scaffold_2168_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

9628..10446
DNA (819bp) protein (273aa)
peptidase M23B Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
NlpD; membrane protein id=14626518 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
peptidase M23B
13_1_20cm_4_scaffold_2168_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10439..11359
DNA (921bp) protein (307aa)
RpoD subfamily RNA polymerase sigma-70 subunit; K03086 RNA polymerase primary sigma factor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
RNA polymerase sigma factor id=4853978 bin=GWA2_Methylomirabilis_73_35 species=Selenomonas noxia genus=Selenomonas taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sigma-70 family RNA polymerase sigma factor
13_1_20cm_4_scaffold_2168_15
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(11378..11872)
DNA (495bp) protein (165aa)
id=2696010 Tax=GWC2_Rokubacteria_70_16_curated
id=2696010 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_20cm_4_scaffold_2168_16
unknown

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comp(11975..12202)
DNA (228bp) protein (76aa)

This feature has no annotations

13_1_20cm_4_scaffold_2168_17
unknown

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comp(12317..12769)
DNA (453bp) protein (151aa)

This feature has no annotations

13_1_20cm_4_scaffold_2168_18
RHI_Planctomycetes_52_36, Planctomycetes, Bacteria

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13643..14113
DNA (471bp) protein (157aa)
RNA polymerase-binding transcription factor DksA n=2 Tax=Pseudomonas protegens RepID=Q4K3F1_PSEF5
dksA; DnaK suppressor protein; K06204 DnaK suppressor protein Tax=RIFCSPHIGHO2_12_FULL_Planctomycetes_52_36_curated
conjugal transfer protein TraR
13_1_20cm_4_scaffold_2168_19
unknown

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14215..14376
DNA (162bp) protein (54aa)

This feature has no annotations

13_1_20cm_4_scaffold_2168_20
unknown

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14376..14684
DNA (309bp) protein (103aa)

This feature has no annotations

13_1_20cm_4_scaffold_2168_trna_3
unknown

Not on your lists

15024..15097
DNA (74bp)
transferRNA
Displaying 23 items

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