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13_1_20cm_4_scaffold_3298

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_3298_1
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3..929)
DNA (927bp) protein (309aa)
chorismate synthase; K01736 chorismate synthase [EC:4.2.3.5] Tax=GWC2_Geobacteraceae_55_20_curated
AroC; chorismate synthase (EC:4.2.3.5)
Chorismate synthase id=3858750 bin=GWF2_Geobacter_54_21 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
13_1_20cm_4_scaffold_3298_2
Thermovibrio ammonificans, Thermovibrio, Desulfurobacteriales, Aquificae, Aquificae, Bacteria

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comp(929..1627)
DNA (699bp) protein (233aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000
Shikimate dehydrogenase n=1 Tax=Thermovibrio ammonificans (strain DSM 15698 / JCM 12110 / HB-1) RepID=E8T3I2_THEA1
shikimate 5-dehydrogenase
13_1_20cm_4_scaffold_3298_3
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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comp(1624..2535)
DNA (912bp) protein (304aa)
YceG like protein n=1 Tax=Patulibacter medicamentivorans RepID=H0E2Y6_9ACTN
YceG like protein {ECO:0000313|EMBL:EHN11955.1}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicame
aminodeoxychorismate lyase
13_1_20cm_4_scaffold_3298_4
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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comp(2770..5307)
DNA (2538bp) protein (846aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256
alanyl-tRNA synthetase (EC:6.1.1.7)
Alanine--tRNA ligase n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FCU1_CONWI
13_1_20cm_4_scaffold_3298_5
RBG_16_Actinobacteria_64_13_curated, Rubrobacteria, Actinobacteria, Bacteria

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comp(5350..5763)
DNA (414bp) protein (138aa)
Putative RNA polymerase sigma factor n=1 Tax=Actinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64 / JCM 3121 / NCIMB 12654 / NBRC 102363 / 431) RepID=I0GY46_ACTM4
FliA/WhiG family RNA polymerase sigma factor; K03090 RNA polymerase sigma-B factor Tax=RBG_16_Actinobacteria_64_13_curated
putative RNA polymerase sigma factor
13_1_20cm_4_scaffold_3298_6
unknown

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comp(5969..6364)
DNA (396bp) protein (132aa)

This feature has no annotations

13_1_20cm_4_scaffold_3298_7
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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comp(6361..7602)
DNA (1242bp) protein (414aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterale
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FCS6_CONWI
tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
13_1_20cm_4_scaffold_3298_8
unknown

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comp(7937..8353)
DNA (417bp) protein (139aa)

This feature has no annotations

13_1_20cm_4_scaffold_3298_9
Acremonium chrysogenum, Acremonium, Hypocreales, Hypocreomycetidae, Ascomycota, Fungi

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comp(8350..8835)
DNA (486bp) protein (162aa)
Possible TolA protein n=1 Tax=Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601) RepID=Q0FL87_PELBH
Cell surface glycoprotein-like protein {ECO:0000313|EMBL:KFH46025.1}; TaxID=857340 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Hypocreomycetidae; Hypocreales; mito
tonB domain protein, putative
13_1_20cm_4_scaffold_3298_10
Ixodes scapularis, Ixodes, Ixodida, Acari, Arthropoda, Metazoa

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comp(8832..9524)
DNA (693bp) protein (231aa)
hypothetical protein n=1 Tax=Streptomyces sp. FxanaD5 RepID=UPI000366DAA9
Putative uncharacterized protein {ECO:0000313|EMBL:EEC01498.1}; TaxID=6945 species="Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodid
hypothetical protein
13_1_20cm_4_scaffold_3298_11
Streptomyces mobaraensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(9668..10549)
DNA (882bp) protein (294aa)
Large Ala/Glu-rich protein (Fragment) n=1 Tax=Streptomyces mobaraensis NBRC 13819 = DSM 40847 RepID=M3BE60_STRMB
Large Ala/Glu-rich protein {ECO:0000313|EMBL:EME97854.1}; Flags: Fragment;; TaxID=1223523 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces m
cellulose-binding protein
13_1_20cm_4_scaffold_3298_12
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

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comp(10597..11964)
DNA (1368bp) protein (456aa)
aspS; aspartyl-tRNA synthetase; K01876 aspartyl-tRNA synthetase [EC:6.1.1.12] Tax=RBG_16_Actinobacteria_68_12_curated
aspartyl-tRNA synthase n=1 Tax=Meiothermus timidus RepID=UPI0003803FF6
aspartyl-tRNA synthetase
13_1_20cm_4_scaffold_3298_13
unknown

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comp(11961..12086)
DNA (126bp) protein (42aa)

This feature has no annotations

Displaying 13 items

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