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13_1_20cm_4_scaffold_1234

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_1234_1
unknown

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comp(1..171)
DNA (171bp) protein (57aa)

This feature has no annotations

13_1_20cm_4_scaffold_1234_2
Bacillus subtilis, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(162..1235)
DNA (1074bp) protein (358aa)
YisS {ECO:0000313|EMBL:AEP86046.1}; EC=1.-.-.- {ECO:0000313|EMBL:AEP86046.1};; TaxID=1052585 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus subtilis subs
Myo-inositol 2-dehydrogenase n=3 Tax=Bacillus amyloliquefaciens RepID=H2AGN6_BACAM
myo-inositol 2-dehydrogenase
13_1_20cm_4_scaffold_1234_3
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

1340..2083
DNA (744bp) protein (248aa)
Transcriptional regulator, LacI family n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TYA5_9CHLR
Transcriptional regulator, LacI family {ECO:0000313|EMBL:EFH83185.1}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Kted
putative LacI family transcriptional regulator
13_1_20cm_4_scaffold_1234_4
CSP1_4_Chloroflexi, Gitt-GS-136, Chloroflexi, Bacteria

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2076..3182
DNA (1107bp) protein (369aa)
putrescine ABC transporter ATP-binding protein; K11072 spermidine/putrescine transport system ATP-binding protein [EC:3.6.3.31] Tax=CSP1_4_Chloroflexi
putrescine ABC transporter ATP-binding protein; K11072 spermidine/putrescine transport system ATP-binding protein [EC:3.6.3.31] id=14628457 bin=bin8_Chloro species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin8_Chloro organism_group=Chloroflexi rbh
spermidine/putrescine ABC transporter ATP-binding subunit
13_1_20cm_4_scaffold_1234_5
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

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3124..4314
DNA (1191bp) protein (397aa)
potD; hypothetical protein; K11069 spermidine/putrescine transport system substrate-binding protein Tax=GWC2_RIF_CHLX_73_18_curated
Putative uncharacterized protein id=4304673 bin=GWC2_Chloroflexi_73_18 species=unknown genus=Acidaminococcus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good + rbh
spermidine/putrescine ABC transporter substrate-binding protein
13_1_20cm_4_scaffold_1234_6
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

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4315..5241
DNA (927bp) protein (309aa)
ABC transporter, putrescine transport system permease protein; K11071 spermidine/putrescine transport system permease protein Tax=GWC2_RIF_CHLX_73_18_curated
Probable ABC transporter, putrescine transport system permease protein id=4304674 bin=GWC2_Chloroflexi_73_18 species=Sinorhizobium fredii genus=Sinorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good + rbh
binding-protein-dependent transport system inner membrane protein
13_1_20cm_4_scaffold_1234_7
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

5231..6076
DNA (846bp) protein (282aa)
binding-protein-dependent transport system inner membrane protein; K11070 spermidine/putrescine transport system permease protein Tax=GWC2_RIF_CHLX_73_18_curated
ABC-type spermidine/putrescine transport system, permease component II id=4304675 bin=GWC2_Chloroflexi_73_18 species=unknown genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
spermidine/putrescine abc transporter permease protein
13_1_20cm_4_scaffold_1234_8
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(6073..7110)
DNA (1038bp) protein (346aa)
Oxidoreductase domain protein n=1 Tax=Desulfotomaculum nigrificans DSM 574 RepID=F0DKU9_9FIRM
oxidoreductase domain-containing protein Tax=RBG_16_Actinobacteria_68_12_curated
oxidoreductase domain-containing protein
13_1_20cm_4_scaffold_1234_9
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7107..8189)
DNA (1083bp) protein (361aa)
Oxidoreductase domain protein n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WDY6_VEREI
Oxidoreductase domain protein {ECO:0000313|EMBL:ABM55843.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Vermineph
oxidoreductase domain-containing protein
13_1_20cm_4_scaffold_1234_10
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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comp(8186..9331)
DNA (1146bp) protein (382aa)
Glutamine--scyllo-inositol transaminase {ECO:0000313|EMBL:ABU59852.1}; EC=2.6.1.50 {ECO:0000313|EMBL:ABU59852.1};; TaxID=383372 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexi
glutamine--scyllo-inositol transaminase (EC:2.6.1.50)
Glutamine--scyllo-inositol transaminase n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NQK6_ROSCS
13_1_20cm_4_scaffold_1234_11
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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comp(9449..10339)
DNA (891bp) protein (297aa)
Thiamine pyrophosphate enzyme, central region n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AVA0_RUBXD
Thiamine pyrophosphate enzyme, central region {ECO:0000313|EMBL:ABG04678.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubroba
thiamine pyrophosphate enzyme, central region
13_1_20cm_4_scaffold_1234_12
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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comp(10336..11235)
DNA (900bp) protein (300aa)
Thiamine pyrophosphate enzyme, central region n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AVA0_RUBXD
Thiamine pyrophosphate enzyme, central region {ECO:0000313|EMBL:ABG04678.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubroba
thiamine pyrophosphate enzyme, central region
13_1_20cm_4_scaffold_1234_13
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

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comp(11235..11795)
DNA (561bp) protein (187aa)
Dihydrofolate reductase {ECO:0000313|EMBL:EHN09770.1}; EC=1.5.1.3 {ECO:0000313|EMBL:EHN09770.1};; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacterace
Dihydrofolate reductase n=1 Tax=Patulibacter medicamentivorans RepID=H0E995_9ACTN
deaminase-reductase domain-containing protein
13_1_20cm_4_scaffold_1234_14

Not on your lists

comp(11803..12192)
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1) RepID=F5XMX6_MICPN
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49487.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
13_1_20cm_4_scaffold_1234_15
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12207..12599
DNA (393bp) protein (131aa)
Heat shock protein 15 n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GNB4_THISH
Heat shock protein 15 {ECO:0000256|PIRNR:PIRNR016821}; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkali
RNA-binding S4 domain-containing protein
13_1_20cm_4_scaffold_1234_16
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(12606..13235)
DNA (630bp) protein (210aa)
Putative uncharacterized protein n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NMK4_ROSCS
hypothetical protein Tax=RBG_16_Actinobacteria_68_12_curated
hypothetical protein
13_1_20cm_4_scaffold_1234_17
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(13281..14612)
DNA (1332bp) protein (444aa)
integral membrane sensor signal transduction histidine kinase; K07653 two-component system, OmpR family, sensor histidine kinase MprB [EC:2.7.13.3] Tax=RBG_16_Actinobacteria_67_10_curated
Putative two-component system sensor n=1 Tax=Patulibacter medicamentivorans RepID=H0E9Y0_9ACTN
integral membrane sensor signal transduction histidine kinase
13_1_20cm_4_scaffold_1234_18
Actinosynnema mirum, Actinosynnema, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(14609..15289)
DNA (681bp) protein (227aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971) RepID=C6WJE3_ACTMD rbh
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ACU34575.1}; Flags: Precursor;; TaxID=446462 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Ac
winged helix family two component transcriptional regulator
13_1_20cm_4_scaffold_1234_19
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(15334..16392)
DNA (1059bp) protein (353aa)
Tax=RBG_16_Actinobacteria_67_10_curated
13_1_20cm_4_scaffold_1234_20
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

16607..17674
DNA (1068bp) protein (356aa)
Protease Do n=1 Tax=Patulibacter medicamentivorans RepID=H0E561_9ACTN
peptidase S1 and S6 chymotrypsin/Hap Tax=RBG_16_Actinobacteria_68_12_curated
peptidase S1 and S6 chymotrypsin/Hap
13_1_20cm_4_scaffold_1234_21
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

17709..18758
DNA (1050bp) protein (350aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AY39_RUBXD rbh
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ABG03689.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" so
NAD-dependent epimerase/dehydratase
13_1_20cm_4_scaffold_1234_22
Mycobacterium setense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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18805..18939
DNA (135bp) protein (45aa)
molecular chaperone GroES n=1 Tax=Rhodococcus sp. 114MFTsu3.1 RepID=UPI00036281CF
Molecular chaperone GroES {ECO:0000313|EMBL:KHO25620.1}; TaxID=431269 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium setense.;"
molecular chaperone GroES
13_1_20cm_4_scaffold_1234_23
unknown

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19158..21092
DNA (1935bp) protein (645aa)

This feature has no annotations

Displaying 23 items

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