ggKbase home page

13_1_20cm_4_scaffold_540

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_540_1

Not on your lists

comp(3..161)
DNA (159bp) protein (53aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000
D-alanine--D-alanine ligase n=1 Tax=Tetrasphaera elongata Lp2 RepID=N0DZ52_9MICO
ddl; D-alanyl-alanine synthetase A
13_1_20cm_4_scaffold_540_2
Streptomyces mobaraensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(161..949)
DNA (789bp) protein (263aa)
Serine/threonine protein kinase with PASTA sensor(S) n=1 Tax=Streptomyces mobaraensis NBRC 13819 = DSM 40847 RepID=M3CCM2_STRMB
Serine/threonine protein kinase with PASTA sensor(S) {ECO:0000313|EMBL:EMF01817.1}; TaxID=1223523 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Strept
serine/threonine protein kinase
13_1_20cm_4_scaffold_540_3
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

1043..1696
DNA (654bp) protein (218aa)
D-alanine--D-alanine ligase (EC:6.3.2.4); K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] Tax=RBG_16_Actinobacteria_68_12_curated
ddl; D-alanine--D-alanine ligase (EC:6.3.2.4)
D-alanine--D-alanine ligase n=1 Tax=Acetonema longum DSM 6540 RepID=F7NMD7_9FIRM
13_1_20cm_4_scaffold_540_4
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(1693..3123)
DNA (1431bp) protein (477aa)
Serine/threonine protein kinase n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3EYQ1_CONWI
Serine/threonine protein kinase {ECO:0000313|EMBL:ADB48454.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexiba
serine/threonine protein kinase
13_1_20cm_4_scaffold_540_5
unknown

Not on your lists

comp(3134..3400)
DNA (267bp) protein (89aa)

This feature has no annotations

13_1_20cm_4_scaffold_540_6
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3419..4744)
DNA (1326bp) protein (442aa)
4-aminobutyrate aminotransferase apoenzyme {ECO:0000313|EMBL:ADU52409.1}; EC=2.6.1.19 {ECO:0000313|EMBL:ADU52409.1};; EC=2.6.1.22 {ECO:0000313|EMBL:ADU52409.1};; TaxID=644966 species="Bacteria; Firmic
4-aminobutyrate aminotransferase (EC:2.6.1.19 2.6.1.22)
4-aminobutyrate aminotransferase n=1 Tax=Sulfobacillus thermosulfidooxidans RepID=UPI00031B3970
13_1_20cm_4_scaffold_540_7
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(4800..6047)
DNA (1248bp) protein (416aa)
Putative uncharacterized protein n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67PZ0_SYMTH
hypothetical protein Tax=RBG_16_Actinobacteria_68_12_curated
hypothetical protein
13_1_20cm_4_scaffold_540_8
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

6074..6652
DNA (579bp) protein (193aa)
dcd; deoxycytidine triphosphate deaminase (EC:3.5.4.13) Tax=RBG_16_Actinobacteria_68_12_curated
dcd; Deoxycytidine triphosphate deaminase (EC:3.5.4.13)
Deoxycytidine triphosphate deaminase n=1 Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RS91_BLASD
13_1_20cm_4_scaffold_540_9
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

Not on your lists

6649..7536
DNA (888bp) protein (296aa)
NAD-dependent epimerase/dehydratase (EC:1.6.5.3) Tax=GWC2_Nitrospirae_57_13_curated
NAD-dependent epimerase/dehydratase (EC:1.6.5.3)
NAD-dependent epimerase/dehydratase id=2099795 bin=GWD2_Nitrospirae-related_57_8 species=unknown genus=Magnetococcus taxon_order=Magnetococcales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
13_1_20cm_4_scaffold_540_10
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(7696..8370)
DNA (675bp) protein (225aa)
O-methyltransferase, family 3 n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L4M9_THERP
O-methyltransferase family 3 Tax=RBG_16_Actinobacteria_68_12_curated
O-methyltransferase, family 3
13_1_20cm_4_scaffold_540_11
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(8360..8917)
DNA (558bp) protein (186aa)
DNA-3-methyladenine glycosylase I {ECO:0000313|EMBL:ADB51426.1}; EC=3.2.2.20 {ECO:0000313|EMBL:ADB51426.1};; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conex
DNA-3-methyladenine glycosylase I (EC:3.2.2.20)
DNA-3-methyladenine glycosylase I n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FC11_CONWI
13_1_20cm_4_scaffold_540_12
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(8937..9251)
DNA (315bp) protein (105aa)
Rieske (2Fe-2S) iron-sulphur domain protein n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3EZG2_CONWI
Rieske (2Fe-2S) iron-sulfur domain-containing protein; K05710 dioxygenase ferredoxin subunit Tax=RBG_16_Actinobacteria_68_12_curated
Rieske (2Fe-2S) iron-sulfur domain-containing protein
13_1_20cm_4_scaffold_540_13
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(9256..9693)
DNA (438bp) protein (146aa)
NifU family SUF system FeS assembly protein; K04488 nitrogen fixation protein NifU and related proteins Tax=RBG_16_Actinobacteria_68_12_curated
SUF system FeS assembly protein, NifU family id=2877257 bin=GWC2_Chloroflexi_73_18 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
NifU family SUF system FeS assembly protein
13_1_20cm_4_scaffold_540_14
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(9690..10934)
DNA (1245bp) protein (415aa)
SufS subfamily cysteine desulfurase; K11717 cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] Tax=RBG_16_Actinobacteria_68_12_curated
Cysteine desulfurase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C3Z3_SPHTD
SufS subfamily cysteine desulfurase
13_1_20cm_4_scaffold_540_15
unknown

Not on your lists

comp(10955..11893)
DNA (939bp) protein (313aa)

This feature has no annotations

13_1_20cm_4_scaffold_540_16
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

comp(11947..12207)
DNA (261bp) protein (87aa)
FeS assembly protein SufD; K09015 Fe-S cluster assembly protein SufD Tax=RBG_16_Actinobacteria_67_10_curated
sufD; putative protein SufD; K09015 Fe-S cluster assembly protein SufD id=24509607 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
sufD; putative protein SufD
13_1_20cm_4_scaffold_540_17
RBG_16_Actinobacteria_68_12_curated, Actinobacteria, Bacteria

Not on your lists

comp(12207..13010)
DNA (804bp) protein (268aa)
FeS assembly protein SufD n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FFK5_CONWI
FeS assembly protein SufD; K09015 Fe-S cluster assembly protein SufD Tax=RBG_16_Actinobacteria_68_12_curated
FeS assembly protein SufD
13_1_20cm_4_scaffold_540_18
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(13000..13368)
DNA (369bp) protein (123aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F752_CONWI
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:ADB48823.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter
glyoxalase/bleomycin resistance protein/dioxygenase
13_1_20cm_4_scaffold_540_19
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(13368..13760)
DNA (393bp) protein (131aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FC06_CONWI
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:ADB51421.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter
glyoxalase/bleomycin resistance protein/dioxygenase
13_1_20cm_4_scaffold_540_20
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13757..14326)
DNA (570bp) protein (190aa)
FeS assembly protein SufB n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DKT5_SINAD
Fe-S cluster assembly protein SufB {ECO:0000313|EMBL:ETX00244.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp.
FeS assembly protein SufB
Displaying 20 items

View Taxonomy