ggKbase home page

13_1_20cm_4_scaffold_18862_4

Organism: 13_1_20CM_4_Actinobacteria_69_9

partial RP 30 / 55 MC: 2 BSCG 35 / 51 ASCG 12 / 38 MC: 1
Location: 3873..4436

Top 3 Functional Annotations

Value Algorithm Source
sigma-70 family RNA polymerase sigma factor Tax=RBG_16_Actinobacteria_68_12_curated UNIPROT
DB: UniProtKB
  • Identity: 56.8
  • Coverage: 183.0
  • Bit_score: 210
  • Evalue 2.10e-51
RNA polymerase sigma-H factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily id=14631759 bin=bin9_gal15 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin9_gal15 organism_group=GAL15 similarity UNIREF
DB: UNIREF100
  • Identity: 40.7
  • Coverage: 172.0
  • Bit_score: 132
  • Evalue 5.30e-28
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 34.9
  • Coverage: 192.0
  • Bit_score: 96
  • Evalue 9.00e-18

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RBG_16_Actinobacteria_68_12_curated → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 564
ATGGCCTCGACGCTGAGTGACAGCCAGCTCGTCGCGCGCTGCCGCGCCGGCGACCAGGCCGCCTGGGGGGAGCTCGTCGAGCGCTTCTCCCGCTACGTGTACGCCATCTCGGTGCAGGCGTTCCGCCTGCCGGAGTCCGACGCCGAGGACGTCTTCCAGGAAGTCTTCGCCCGGGCATACCAGCACCTCGACAAGCTGCGGGACGACGCGGCGGTCAAGCCGTGGCTGGCCCAGCTGACCCGGCGGCTCTGCATCGATCGCCTGCGCGCGAGCGCGCGCGAGCGGCCGGTCGCCGACGAGGAGCTCGCGACGGCAGAGCCCGACGAGACCCTTGCGTTCCTGGACGAGGCCCTGGCCGTTCACGAGGCGCTCGCCGCCGCGCCGGAGCACTGCCGCGAGATCCTCGACCGGTTCTTCGCGCGCGATGAGAGCTACAAGACGATCGCCACCGCGCTCGACCTCCCTTCCGGGACGATCGCCAGCCGCATCTCGCGCTGCCTCGCCAGGCTGAAGGCTCATCTCGAGGGAAGAAGTGACGGCCCCGGCCCGTCTGGGGTTCGATGA
PROTEIN sequence
Length: 188
MASTLSDSQLVARCRAGDQAAWGELVERFSRYVYAISVQAFRLPESDAEDVFQEVFARAYQHLDKLRDDAAVKPWLAQLTRRLCIDRLRASARERPVADEELATAEPDETLAFLDEALAVHEALAAAPEHCREILDRFFARDESYKTIATALDLPSGTIASRISRCLARLKAHLEGRSDGPGPSGVR*