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13_1_20cm_2_scaffold_2083

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_2083_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(2..121)
DNA (120bp) protein (40aa)
nth; endonuclease III (EC:4.2.99.18) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
13_1_20cm_2_scaffold_2083_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(140..559)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBV3_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_1_20cm_2_scaffold_2083_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(556..1713)
DNA (1158bp) protein (386aa)
Aminotransferase class I and II n=1 Tax=Desulfatibacillum alkenivorans (strain AK-01) RepID=B8FLE9_DESAA
aspartate aminotransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
aspartate aminotransferase
13_1_20cm_2_scaffold_2083_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(1710..2273)
DNA (564bp) protein (188aa)
glycosyl transferase family 2 protein (EC:2.4.1.-); K00729 dolichyl-phosphate beta-glucosyltransferase [EC:2.4.1.117] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
UDP-glucose--undecaprenyl-phosphate glucosyltransferase n=1 Tax=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) RepID=Q39Z37_GEOMG
UDP-glucose--undecaprenyl-phosphate glucosyltransferase
13_1_20cm_2_scaffold_2083_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2221..3780)
DNA (1560bp) protein (520aa)
malate dehydrogenase; K00027 malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
malate dehydrogenase (EC:1.1.1.38)
Malate dehydrogenase (Oxaloacetate decarboxylating) n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AX02_RUBXD
13_1_20cm_2_scaffold_2083_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3780..5006)
DNA (1227bp) protein (409aa)
CinA-like protein n=2 Tax=Chloroflexus RepID=A9WJE6_CHLAA
hypothetical protein; K03742 competence/damage-inducible protein CinA Tax=GWA2_Rokubacteria_73_35_curated
competence/damage-inducible protein CinA
13_1_20cm_2_scaffold_2083_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5223..6722
DNA (1500bp) protein (500aa)
RNA polymerase sigma factor RpoD n=2 Tax=Geobacter sulfurreducens RepID=D7AEN1_GEOSK
rpoD; RNA polymerase sigma factor rpoD; K03086 RNA polymerase primary sigma factor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
rpoD; RNA polymerase sigma-70 factor RpoD
13_1_20cm_2_scaffold_2083_8
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(6939..7454)
DNA (516bp) protein (172aa)
DinB family protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0HZZ0_CALAS
DinB family protein Tax=CSP1_6_Rokubacteria
DinB family protein
13_1_20cm_2_scaffold_2083_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7466..7681)
DNA (216bp) protein (72aa)
Biotin/lipoyl attachment domain-containing protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HH44_ANADF
biotin/lipoic acid binding domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
biotin/lipoyl attachment domain-containing protein
13_1_20cm_2_scaffold_2083_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(7674..8945)
DNA (1272bp) protein (424aa)
Carbamoyl-phosphate synthase L chain ATP-binding protein; K01961 acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] Tax=GWA2_Rokubacteria_73_35_curated
Carbamoyl-phosphate synthase L chain ATP-binding protein n=1 Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WSI5_KYRT2
Carbamoyl-phosphate synthase L chain ATP-binding protein
13_1_20cm_2_scaffold_2083_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(8942..9928)
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Ilumatobacter coccineus YM16-304 RepID=M4ZWY9_9ACTN
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein
13_1_20cm_2_scaffold_2083_12
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(9951..10781)
DNA (831bp) protein (277aa)
Uncharacterized protein n=1 Tax=Ilumatobacter coccineus YM16-304 RepID=M5AGU0_9ACTN
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein
13_1_20cm_2_scaffold_2083_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(10789..11670)
DNA (882bp) protein (294aa)
Amino acid or sugar ABC transport system, permease protein n=1 Tax=delta proteobacterium NaphS2 RepID=D8F1B2_9DELT
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
amino acid/amide ABC transporter membrane protein 1, HAAT family
13_1_20cm_2_scaffold_2083_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(11940..12767)
DNA (828bp) protein (276aa)
Inner-membrane translocator n=1 Tax=Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 / RQ-24) RepID=D7CSU2_TRURR
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
inner-membrane translocator
13_1_20cm_2_scaffold_2083_15
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(12771..14576)
DNA (1806bp) protein (602aa)
AMP-dependent synthetase and ligase; K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3] Tax=GWC2_Rokubacteria_70_16_curated
fatty-acid--CoA ligase n=1 Tax=Calescamantes bacterium JGI 0000106-G12 RepID=UPI0003B5CFE0
AMP-dependent synthetase and ligase
13_1_20cm_2_scaffold_2083_16
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(14576..15355)
DNA (780bp) protein (260aa)
ABC transporter, ATP-binding protein n=1 Tax=delta proteobacterium NaphS2 RepID=D8F1B5_9DELT
ABC transporter-like protein; K01996 branched-chain amino acid transport system ATP-binding protein Tax=GWC2_Rokubacteria_70_16_curated
ABC transporter-like protein
13_1_20cm_2_scaffold_2083_17
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(15352..16146)
DNA (795bp) protein (265aa)
ABC transporter related n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q20YT6_RHOPB
branched-chain amino acid ABC transporter ATP-binding protein; K01995 branched-chain amino acid transport system ATP-binding protein Tax=GWC2_Rokubacteria_70_16_curated
ABC transporter-like protein
13_1_20cm_2_scaffold_2083_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(16181..17374)
DNA (1194bp) protein (398aa)
Extracellular ligand-binding receptor n=1 Tax=Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14) RepID=E1QMH9_DESB2 rbh
extracellular ligand-binding receptor Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
extracellular ligand-binding receptor
13_1_20cm_2_scaffold_2083_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17421..18608)
DNA (1188bp) protein (396aa)
dinB; DNA polymerase IV, devoid of proofreading, damage-inducible protein P (EC:2.7.7.7) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
dinB; DNA polymerase IV, devoid of proofreading, damage-inducible protein P (EC:2.7.7.7)
DNA polymerase IV n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJA9_9BACT
13_1_20cm_2_scaffold_2083_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(18716..18898)
DNA (183bp) protein (61aa)
Excisionase/Xis, DNA-binding protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
13_1_20cm_2_scaffold_2083_21
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(18912..19226)
DNA (315bp) protein (105aa)
cysE; serine acetyltransferase (EC:2.3.1.30) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
cysE; serine acetyltransferase (EC:2.3.1.30)
Serine acetyltransferase n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MLA2_9BACT
Displaying 21 items

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