ggKbase home page

13_1_20cm_2_scaffold_321

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_321_1
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(3..983)
DNA (981bp) protein (327aa)
Cobalamin uptake ligand-gated TonB-dependent outer membrane channel n=1 Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A7D0_PELCD
btuB; TonB-dependent outer membrane receptor for cobalamin and Fe transport; K02014 iron complex outermembrane recepter protein Tax=GWA2_Rokubacteria_70_23_curated
btuB; cobalamin uptake ligand-gated TonB-dependent outer membrane channel
13_1_20cm_2_scaffold_321_2
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(994..1734)
DNA (741bp) protein (247aa)
TonB-dependent receptor n=1 Tax=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) RepID=Q2RX52_RHORT
btuB; TonB-dependent outer membrane receptor for cobalamin and Fe transport; K02014 iron complex outermembrane recepter protein Tax=CSP1_6_Rokubacteria
TonB-dependent receptor
13_1_20cm_2_scaffold_321_3
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1862..2767)
DNA (906bp) protein (302aa)
Periplasmic binding protein n=2 Tax=Chloroflexus RepID=A9WHK1_CHLAA
periplasmic binding protein; K02016 iron complex transport system substrate-binding protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
periplasmic binding protein
13_1_20cm_2_scaffold_321_4
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(2784..3608)
DNA (825bp) protein (275aa)
putative Vitamin B12 import system, ATP-binding protein BtuD (EC:3.6.3.-); K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34] Tax=CSP1_6_Rokubacteria
putative Vitamin B12 import system, ATP-binding protein BtuD (EC:3.6.3.-)
iron ABC transporter ATP-binding protein n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=UPI0001C2AD07
13_1_20cm_2_scaffold_321_5
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(3605..4621)
DNA (1017bp) protein (339aa)
Vitamin B12 import system, permease protein BtuC n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PGJ2_9BACT
btuC; vitamin B12 import system permease protein BtuC; K02015 iron complex transport system permease protein Tax=CSP1_6_Rokubacteria
btuC; vitamin B12 import system permease protein BtuC
13_1_20cm_2_scaffold_321_6
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(4618..5472)
DNA (855bp) protein (285aa)
Periplasmic binding protein n=1 Tax=Desulforudis audaxviator (strain MP104C) RepID=B1I4F1_DESAP
periplasmic binding protein; K02016 iron complex transport system substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
periplasmic binding protein
13_1_20cm_2_scaffold_321_7
GWC2_Geobacteraceae_53_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5501..6268
DNA (768bp) protein (256aa)
hypothetical protein Tax=GWC2_Geobacteraceae_53_11_curated
13_1_20cm_2_scaffold_321_8
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

7079..8329
DNA (1251bp) protein (417aa)
Outer membrane efflux protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01WW9_SOLUE
Outer membrane efflux protein {ECO:0000313|EMBL:ABJ85846.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" s
outer membrane efflux protein
13_1_20cm_2_scaffold_321_9
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

8326..9468
DNA (1143bp) protein (381aa)
Putative Acriflavine resistance protein A n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PE73_9BACT
putative acriflavine resistance protein A; K15727 cobalt-zinc-cadmium resistance protein CzcB Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
putative acriflavine resistance protein A
13_1_20cm_2_scaffold_321_10
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

9465..12539
DNA (3075bp) protein (1025aa)
Heavy metal efflux pump, CzcA family n=1 Tax=Gloeobacter kilaueensis JS1 RepID=U5QR08_9CYAN rbh
Heavy metal efflux pump, cobalt-zinc-cadmium {ECO:0000313|EMBL:CDM64147.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphat
cusA; heavy metal efflux pump, CzcA family
13_1_20cm_2_scaffold_321_11
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(12536..13954)
DNA (1419bp) protein (473aa)
cobB; cobyrinic acid a,c-diamide synthase; K02224 cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Cobyrinic acid A,C-diamide synthase n=1 Tax=Desulfovibrio magneticus str. Maddingley MBC34 RepID=K6GC70_9DELT rbh
cobyrinic acid a,c-diamide synthase
13_1_20cm_2_scaffold_321_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13951..15081)
DNA (1131bp) protein (377aa)
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC:2.4.2.21); K00768 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21] Tax=GWA2_Rokubacteria_
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC:2.4.2.21)
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase n=1 Tax=Desulfotomaculum nigrificans DSM 574 RepID=F0DJP0_9FIRM
13_1_20cm_2_scaffold_321_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15056..15613)
DNA (558bp) protein (186aa)
cobalbumin biosynthesis protein (EC:2.7.7.62); K02231 adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_cu
cobalbumin biosynthesis protein (EC:2.7.7.62)
Adenosylcobinamide-phosphate guanylyltransferase n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QM97_METTR
13_1_20cm_2_scaffold_321_14
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

15913..16740
DNA (828bp) protein (276aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI000318AD73
h16_A2129; Zn-dependent hydrolase Tax=CSP1_6_Rokubacteria
hypothetical protein
13_1_20cm_2_scaffold_321_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(16755..17108)
DNA (354bp) protein (118aa)
hypothetical protein n=1 Tax=Leucobacter sp. UCD-THU RepID=UPI00037100A6
RNA-binding S4 domain-containing protein; K04762 ribosome-associated heat shock protein Hsp15 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hslR; ribosome-associated heat shock protein
13_1_20cm_2_scaffold_321_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

17333..18007
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MHY2_9BACT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein
13_1_20cm_2_scaffold_321_17
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

18004..18657
DNA (654bp) protein (218aa)
id=14627273 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
13_1_20cm_2_scaffold_321_18
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

Not on your lists

comp(18785..19684)
DNA (900bp) protein (300aa)
Dipeptide ABC transporter permease component n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZCL3_AZOL4
binding-protein-dependent transport systems inner membrane component; K02034 peptide/nickel transport system permease protein Tax=RBG_16_Armatimonadetes_67_12_curated
dppC2; Dipeptide ABC transporter; permease component
13_1_20cm_2_scaffold_321_19
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

Not on your lists

comp(19751..20695)
DNA (945bp) protein (315aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C4Z6_SPHTD
binding-protein-dependent transport system inner membrane protein; K02033 peptide/nickel transport system permease protein Tax=RBG_16_Armatimonadetes_67_12_curated
binding-protein-dependent transport system inner membrane protein
13_1_20cm_2_scaffold_321_20
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(20709..20948)
DNA (240bp) protein (80aa)
ABC transporter substrate binding protein (dipeptide); K02035 peptide/nickel transport system substrate-binding protein Tax=GWA2_Rokubacteria_70_23_curated
13_1_20cm_2_scaffold_321_21
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(20968..22524)
DNA (1557bp) protein (519aa)
hypothetical protein n=1 Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI000365450F
ABC transporter substrate binding protein (dipeptide); K02035 peptide/nickel transport system substrate-binding protein Tax=GWA2_Rokubacteria_70_23_curated
extracellular solute-binding protein family 5
13_1_20cm_2_scaffold_321_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(22622..23182)
DNA (561bp) protein (187aa)
metal dependent phosphohydrolase; K15634 probable phosphoglycerate mutase [EC:5.4.2.1] Tax=GWA2_Rokubacteria_73_35_curated
Metal dependent phosphohydrolase n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LHV7_SYNFM
metal dependent phosphohydrolase
13_1_20cm_2_scaffold_321_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

24097..24285
DNA (189bp) protein (63aa)
pckG; phosphoenolpyruvate carboxykinase [GTP] (PEP carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) (EC:4.1.1.32) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Phosphoenolpyruvate carboxykinase [GTP] n=1 Tax=Rhodanobacter denitrificans RepID=I4WSU3_9GAMM
phosphoenolpyruvate carboxykinase (GTP)
Displaying 23 items

View Taxonomy