ggKbase home page

13_1_20cm_2_scaffold_4839

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_4839_1
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

1..459
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. AKL17 RepID=UPI000373887D
Lytic transglycosylase, catalytic Tax=GWC2_Rokubacteria_70_16_curated
lytic transglycosylase catalytic subunit
13_1_20cm_2_scaffold_4839_2
unknown

Not on your lists

725..1159
DNA (435bp) protein (145aa)

This feature has no annotations

13_1_20cm_2_scaffold_4839_3
Burkholderia sp. H160, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1274..2113)
DNA (840bp) protein (280aa)
phosphoesterase PA-phosphatase n=1 Tax=Nevskia ramosa RepID=UPI0003B5625C
Phosphoesterase PA-phosphatase related {ECO:0000313|EMBL:EDZ99467.1}; TaxID=516466 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Bur
membrane protein DedA and phosphatase, PAP2-like family
13_1_20cm_2_scaffold_4839_4
CSP1_5_NC10, NC10, Bacteria

Not on your lists

2359..3282
DNA (924bp) protein (308aa)
Alpha/beta hydrolase fold n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFQ1_9BACT
hypothetical protein Tax=CSP1_5_NC10
Alpha/beta hydrolase fold
13_1_20cm_2_scaffold_4839_5
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(3946..4260)
DNA (315bp) protein (105aa)
ribonuclease H; K03469 ribonuclease HI [EC:3.1.26.4] Tax=GWC2_Rokubacteria_70_16_curated
ribonuclease H n=1 Tax=Dehalobacter sp. E1 RepID=UPI0002EF8831
ribonuclease H
13_1_20cm_2_scaffold_4839_6
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(4568..5278)
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKY7_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
hypothetical protein
13_1_20cm_2_scaffold_4839_trna_1
unknown

Not on your lists

comp(5313..5384)
DNA (72bp)
transferRNA
13_1_20cm_2_scaffold_4839_7
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(5415..7250)
DNA (1836bp) protein (612aa)
RNA polymerase sigma factor RpoD n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UDJ5_MYXSD
rpoD; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor Tax=GWA2_Rokubacteria_70_23_curated
RNA polymerase sigma factor RpoD
13_1_20cm_2_scaffold_4839_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(7243..9051)
DNA (1809bp) protein (603aa)
DNA primase; K02316 DNA primase [EC:2.7.7.-] Tax=GWA2_Rokubacteria_73_35_curated
DNA primase n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SJD1_RHOMR
DNA primase
13_1_20cm_2_scaffold_4839_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(9077..11464)
DNA (2388bp) protein (796aa)
Endonuclease MutS2 n=1 Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WS14_KYRT2
MutS2 family protein; K07456 DNA mismatch repair protein MutS2 Tax=GWA2_Rokubacteria_73_35_curated
MutS2 family protein
13_1_20cm_2_scaffold_4839_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(11534..11779)
DNA (246bp) protein (82aa)
30S ribosomal protein S21 n=2 Tax=Leptospirillum RepID=C6HYU4_9BACT
rpsU; 30S ribosomal protein S21 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
rpsU; 30S ribosomal protein S21
13_1_20cm_2_scaffold_4839_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

11956..13146
DNA (1191bp) protein (397aa)
Putative uncharacterized protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HH17_ANADF
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein
13_1_20cm_2_scaffold_4839_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(13143..13481)
DNA (339bp) protein (113aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29); K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=1 Tax=Sulfurihydrogenibium sp. (strain YO3AOP1) RepID=PTH_SULSY
13_1_20cm_2_scaffold_4839_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


comp(13627..14322)
DNA (696bp) protein (232aa)
50S ribosomal protein L25 n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0LEI4_9BACT
50S ribosomal protein L25P; K02897 large subunit ribosomal protein L25 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
rplY; 50S ribosomal protein L25
13_1_20cm_2_scaffold_4839_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(14336..15274)
DNA (939bp) protein (313aa)
prs; ribose-phosphate pyrophosphokinase (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP synthetase) (PRPP synthetase) (EC:2.7.6.1) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
prs; ribose-phosphate pyrophosphokinase (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP synthetase) (PRPP synthetase) (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MK00_9BACT
13_1_20cm_2_scaffold_4839_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(15382..16041)
DNA (660bp) protein (220aa)
ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148) Tax=GWA2_Rokubacteria_73_35_curated
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Desulfotomaculum gibsoniae DSM 7213 RepID=R4K979_9FIRM
4-diphosphocytidyl-2C-methyl-D-erythritol kinase
Displaying 16 items

View Taxonomy