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13_1_20cm_2_scaffold_2241

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_2241_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..806)
DNA (804bp) protein (268aa)
Inner-membrane translocator n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5D1D1_VARPS rbh
Inner-membrane translocator {ECO:0000313|EMBL:ACS22701.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source=
inner-membrane translocator
13_1_20cm_2_scaffold_2241_2
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(803..1666)
DNA (864bp) protein (288aa)
ABC transporter permease n=1 Tax=Variovorax paradoxus RepID=UPI00036B5362 rbh
Branched-chain amino acid ABC-type transport system, permease component {ECO:0000313|EMBL:EJL71665.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholde
putative branched-chain amino acid ABC transporter, permease protein
13_1_20cm_2_scaffold_2241_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1669..2367)
DNA (699bp) protein (233aa)
ABC transporter ATP-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI00037943B5 rbh
Variovorax paradoxus strain MEDvA23 contig_99, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ20100.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
putative branched-chain amino acid ABC transporter, ATP-binding protein
13_1_20cm_2_scaffold_2241_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2370..3092)
DNA (723bp) protein (241aa)
Putative branched-chain amino acid ABC transporter, ATP-binding protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XMW0_VARPD rbh
Putative branched-chain amino acid ABC transporter, ATP-binding protein {ECO:0000313|EMBL:AGU53599.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadac
putative branched-chain amino acid ABC transporter, ATP-binding protein
13_1_20cm_2_scaffold_2241_5
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3095..4327)
DNA (1233bp) protein (411aa)
ABC-type branched-chain amino acid transport system, periplasmic component n=1 Tax=Variovorax sp. CF313 RepID=J2KEV6_9BURK rbh
ABC-type branched-chain amino acid transport system, periplasmic component {ECO:0000313|EMBL:EJL71668.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkho
putative substrate-binding component of ABC transporter
13_1_20cm_2_scaffold_2241_6
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4324..5355)
DNA (1032bp) protein (344aa)
Alcohol dehydrogenase (EC:1.1.1.1)
Alcohol dehydrogenase, class IV n=1 Tax=Variovorax sp. CF313 RepID=J2KET3_9BURK rbh
Alcohol dehydrogenase, class IV {ECO:0000313|EMBL:EJL71643.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp
13_1_20cm_2_scaffold_2241_7
Herbaspirillum sp. GW103, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5352..6008)
DNA (657bp) protein (219aa)
pcaJ; 3-oxoadipate CoA-transferase subunit B (EC:2.8.3.6)
3-oxoadipate CoA-transferase subunit B n=1 Tax=Herbaspirillum sp. GW103 RepID=I3CRW1_9BURK rbh
3-oxoadipate CoA-transferase subunit B {ECO:0000313|EMBL:EIJ46354.1}; TaxID=1175306 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="
13_1_20cm_2_scaffold_2241_8
Burkholderia sacchari, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6005..6664)
DNA (660bp) protein (220aa)
pcaI; 3-oxoadipate CoA-transferase subunit A (EC:2.8.3.5)
3-oxoadipate CoA-transferase subunit A n=1 Tax=Janthinobacterium lividum RepID=UPI000288B43B rbh
3-oxoadipate CoA-transferase {ECO:0000313|EMBL:KHD20105.1}; TaxID=159450 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia
13_1_20cm_2_scaffold_2241_9
Burkholderia jiangsuensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6667..8142)
DNA (1476bp) protein (492aa)
betaine-aldehyde dehydrogenase n=1 Tax=Curvibacter lanceolatus RepID=UPI00036488A5 rbh
Betaine-aldehyde dehydrogenase {ECO:0000313|EMBL:KAK47917.1}; TaxID=1458357 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholder
putative aldehyde dehydrogenase
13_1_20cm_2_scaffold_2241_10
Burkholderia terrae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8152..8496)
DNA (345bp) protein (115aa)
4-nitrocatechol monooxygenase ferridoxin protein n=1 Tax=Burkholderia terrae BS001 RepID=I5CFF2_9BURK
4-nitrocatechol monooxygenase ferridoxin protein {ECO:0000313|EMBL:EIM94620.1}; TaxID=1171375 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;"
Rieske [2Fe-2S] domain-containing protein
13_1_20cm_2_scaffold_2241_11
Burkholderia phymatum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8498..9526)
DNA (1029bp) protein (343aa)
Uncharacterized protein n=1 Tax=Burkholderia phymatum (strain DSM 17167 / STM815) RepID=B2JUH3_BURP8 rbh
Uncharacterized protein {ECO:0000313|EMBL:ACC74695.1}; TaxID=391038 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia phyma
hypothetical protein
13_1_20cm_2_scaffold_2241_12
Burkholderia jiangsuensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9538..10032)
DNA (495bp) protein (165aa)
Hydroquinone dioxygenase small subunit n=1 Tax=Burkholderia sp. SJ98 RepID=K8R878_9BURK
Hydroxyquinol 1,2-dioxygenase {ECO:0000313|EMBL:KAK43556.1}; TaxID=1458357 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderi
hydroquinone dioxygenase small subunit
13_1_20cm_2_scaffold_2241_13
Burkholderia sp. MR1, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10240..10926
DNA (687bp) protein (229aa)
IclR family transcriptional regulator n=1 Tax=Cupriavidus sp. BIS7 RepID=UPI0003001DDE
Beta-ketoadipate pathway transcriptional regulator PcaR/PcaU, IclR family {ECO:0000313|EMBL:KIG10362.1}; TaxID=870478 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholder
putative transcription regulator protein, IclR family
13_1_20cm_2_scaffold_2241_14
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11206..12087
DNA (882bp) protein (294aa)
hypothetical protein n=1 Tax=Amycolatopsis benzoatilytica RepID=UPI0003664B48 rbh
Uncharacterized protein {ECO:0000313|EMBL:AGP38092.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium c
hypothetical protein
13_1_20cm_2_scaffold_2241_15
RBG_16_Chloroflexi_52_11_curated, Chloroflexi, Bacteria

Not on your lists

comp(12092..12565)
DNA (474bp) protein (158aa)
3-demethylubiquinone-9 3-methyltransferase n=1 Tax=Brevibacillus sp. phR RepID=UPI0002E80280
3-demethylubiquinone-9 3-methyltransferase Tax=RBG_16_Chloroflexi_52_11_curated
3-demethylubiquinone-9 3-methyltransferase
13_1_20cm_2_scaffold_2241_16
R_OP3X_51_18, OP3X, Bacteria

Not on your lists

12759..14579
DNA (1821bp) protein (607aa)
hypothetical protein n=1 Tax=Methylobacter marinus RepID=UPI000372BC00
beta-lactamase
Tax=RIFCSPHIGHO2_02_FULL_OP3X_51_18_curated
13_1_20cm_2_scaffold_2241_17
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

14576..15019
DNA (444bp) protein (148aa)
transcriptional regulator, MarR family protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C41A7
Transcriptional regulator {ECO:0000313|EMBL:AGA31357.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera a
transcriptional regulator
13_1_20cm_2_scaffold_2241_18
Candidatus Latescibacter anaerobius, Candidatus Latescibacter, Latescibacteria, Bacteria

Not on your lists

comp(15073..15525)
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Candidatus Latescibacter anaerobius SCGC AAA252-E07 RepID=UPI0003B6EA4C
13_1_20cm_2_scaffold_2241_19
unknown

Not on your lists

comp(15625..16008)
DNA (384bp) protein (128aa)

This feature has no annotations

13_1_20cm_2_scaffold_2241_20
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(16096..17034)
DNA (939bp) protein (313aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYR0_9BACT
secretion protein HlyD Tax=RBG_16_Acidobacteria_70_10_curated
HlyD-like secretion protein
13_1_20cm_2_scaffold_2241_21
Leptospirillum ferrodiazotrophum, Leptospirillum, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(17060..17749)
DNA (690bp) protein (230aa)
ABC transporter related n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYQ9_9BACT
ABC transporter related {ECO:0000313|EMBL:EES52344.1}; TaxID=412449 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Leptospirillum.;" source="Leptospirillum ferrodiazotrophum.;"
ABC-type export system ATPase component DevA family
13_1_20cm_2_scaffold_2241_22
Leptospirillum sp. Group IV, Leptospirillum, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(17759..18886)
DNA (1128bp) protein (376aa)
Uncharacterized protein n=1 Tax=Leptospirillum sp. Group IV 'UBA BS' RepID=T0XM36_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:EQD23881.1}; TaxID=1260983 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Leptospirillum.;" source="Leptospirillum sp. Group IV 'UBA BS'.;"
ABC transporter permease
13_1_20cm_2_scaffold_2241_23
unknown

Not on your lists

comp(18896..18973)
DNA (78bp) protein (26aa)

This feature has no annotations

Displaying 23 items

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