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13_1_40cm_2_scaffold_1012

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_1012_1
Thermocrinis ruber, Thermocrinis, Aquificales, Aquificae, Aquificae, Bacteria

Not on your lists

comp(1..516)
DNA (516bp) protein (172aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043744}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043720};; tRNA pseudouridine(55) s
tRNA pseudouridine synthase B n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CFW9_THET1
tRNA pseudouridine synthase B
13_1_40cm_2_scaffold_1012_2
R_Deltaproteobacteria_44_9, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(494..1267)
DNA (774bp) protein (258aa)
Exopolyphosphatase-like enzyme n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6PLA2_9FIRM
phosphoesterase; K06881 phosphoesterase RecJ domain-containing protein Tax=RIFCSPLOWO2_02_Deltaproteobacteria_44_9_curated
DHH family protein
13_1_40cm_2_scaffold_1012_3
Desmospora sp. 8437, Desmospora, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(1495..1860)
DNA (366bp) protein (122aa)
Ribosome-binding factor A n=1 Tax=Desmospora sp. 8437 RepID=F5SC68_9BACL
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=997346 species="Bacteria; Firmicutes; Bacilli; Bacillales; Thermoactinomycetaceae; Desmospora.;" sourc
ribosome-binding factor A
13_1_40cm_2_scaffold_1012_4
S_Thermoanaerobacterales_50_218, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1893..3875)
DNA (1983bp) protein (661aa)
translation initiation factor IF-2 n=1 Tax=Thermodesulfatator atlanticus RepID=UPI0003B2E411
Translation initiation factor IF-2 Tax=S_Thermoanaerobacterales_50_218
translation initiation factor IF-2
13_1_40cm_2_scaffold_1012_5
Paenibacillus macerans, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3932..4240)
DNA (309bp) protein (103aa)
Putative uncharacterized protein n=1 Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9R8X8_AMMDK
Uncharacterized protein {ECO:0000313|EMBL:KFN09104.1}; TaxID=44252 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus macerans (Bacillus macer
hypothetical protein
13_1_40cm_2_scaffold_1012_6
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists

comp(4221..5252)
DNA (1032bp) protein (344aa)
NusA antitermination factor n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CFX3_THET1
NusA antitermination factor
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=525904 species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;
13_1_40cm_2_scaffold_1012_7
Halorhodospira halophila, Halorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5215..5685)
DNA (471bp) protein (157aa)
Ribosome maturation factor RimP n=1 Tax=Halorhodospira halophila (strain DSM 244 / SL1) RepID=RIMP_HALHL
hypothetical protein
Ribosome maturation factor RimP {ECO:0000255|HAMAP-Rule:MF_01077}; TaxID=349124 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Halorhodospira.;" source="
13_1_40cm_2_scaffold_1012_8
RBG_16_OP11_43_9_curated, Microgenomates, Bacteria

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comp(5706..6794)
DNA (1089bp) protein (363aa)
hypothetical protein n=1 Tax=Candidatus Microgenomatus auricola SCGC AAA011-E14 RepID=UPI00036D4835
protein-export membrane protein SecF; K03074 preprotein translocase subunit SecF Tax=RBG_16_OP11_43_9_curated
protein-export membrane protein SecF
13_1_40cm_2_scaffold_1012_9
R_OD1_Yanofskybacteria_50_12, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(6778..8253)
DNA (1476bp) protein (492aa)
Protein translocase subunit SecD n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C4J3_SPHTD
protein-export membrane protein SecD; K03072 preprotein translocase subunit SecD Tax=RIFCSPHIGHO2_02_FULL_OD1_Yanofskybacteria_50_12_curated
protein-export membrane protein SecD
13_1_40cm_2_scaffold_1012_10
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(8505..8711)
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C7P9_SPHTD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ37882.1}; TaxID=479434 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" sourc
13_1_40cm_2_scaffold_1012_11
R_SM2F11_49_9, SM2F11, Bacteria

Not on your lists

comp(8730..9755)
DNA (1026bp) protein (342aa)
Holliday junction DNA helicase RuvB; K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12] Tax=RIFCSPHIGHO2_01_FULL_SM2F11_49_9_curated
ruvB; Holliday junction DNA helicase RuvB (EC:3.1.22.4)
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Paenibacillus alvei DSM 29 RepID=K4ZL74_PAEAL
13_1_40cm_2_scaffold_1012_12
Symbiobacterium thermophilum, Symbiobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9752..10354)
DNA (603bp) protein (201aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000255|HAMAP-Rule:MF_00031}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_00031};; TaxID=292459 species="Bacteria; Firmicutes; Clostridia; Clostridial
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=RUVA_SYMTH
ruvA; Holliday junction DNA helicase RuvA
13_1_40cm_2_scaffold_1012_13
Kosmotoga olearia, Kosmotoga, Kosmotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

comp(10351..10896)
DNA (546bp) protein (182aa)
ruvC; Holliday junction resolvase (EC:3.1.22.4)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday
Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Kosmotoga olearia (strain TBF 19.5.1) RepID=C5CGL8_KOSOT
13_1_40cm_2_scaffold_1012_14
RBG_13_Chloroflexi_51_18_curated, Chloroflexi, Bacteria

Not on your lists

comp(11002..11757)
DNA (756bp) protein (252aa)
Probable transcriptional regulatory protein Nther_1800 n=1 Tax=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) RepID=Y1800_NATTJ
hypothetical protein Tax=RBG_13_Chloroflexi_51_18_curated
hypothetical protein
13_1_40cm_2_scaffold_1012_15
Thermotoga sp. Cell2, Thermotoga, Thermotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

comp(11786..12931)
DNA (1146bp) protein (382aa)
tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:00002
Tyrosine--tRNA ligase n=1 Tax=Thermotoga sp. EMP RepID=J9DSA6_9THEM
13_1_40cm_2_scaffold_1012_16
unknown

Not on your lists

comp(12938..13492)
DNA (555bp) protein (185aa)

This feature has no annotations

13_1_40cm_2_scaffold_1012_17
Moorella glycerini, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(13489..15876)
DNA (2388bp) protein (796aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tR
phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=SYFB_MOOTA
13_1_40cm_2_scaffold_1012_18
Moorella thermoacetica, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(15883..16905)
DNA (1023bp) protein (341aa)
phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000255|HAMAP-Rule:MF_00281}; EC=6.1.1.20 {ECO:0000255|HAMAP-Rule:MF_00281};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000255|HAMAP-Rule:MF_00281}
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=SYFA_MOOTA
13_1_40cm_2_scaffold_1012_19
BJP_IG2103_Clostridiales_50_15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16902..17537)
DNA (636bp) protein (212aa)
RNA methyltransferase n=1 Tax=Lachnospiraceae bacterium NK4A179 RepID=UPI0003B380D2
TrmH family RNA methyltransferase
Tax=BJP_IG2103_Clostridiales_50_15
13_1_40cm_2_scaffold_1012_20
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists


comp(17638..17991)
DNA (354bp) protein (118aa)
50S ribosomal protein L20 n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EFW2_9CHLR
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1129897 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Spha
rplT; 50S ribosomal protein L20
13_1_40cm_2_scaffold_1012_21
Enterorhabdus caecimuris, Enterorhabdus, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


comp(17991..18185)
DNA (195bp) protein (65aa)
50S ribosomal protein L35 n=1 Tax=Enterorhabdus caecimuris B7 RepID=R9L1P7_9ACTN
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1235794 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Enterorhab
50S ribosomal protein L35
13_1_40cm_2_scaffold_1012_22
Desulfotomaculum carboxydivorans, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18178..18687)
DNA (510bp) protein (170aa)
Translation initiation factor IF-3 n=2 Tax=Desulfotomaculum RepID=F6B318_DESCC
translation initiation factor IF-3
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=868595 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomac
13_1_40cm_2_scaffold_1012_23
unknown

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18925..20040
DNA (1116bp) protein (372aa)

This feature has no annotations

13_1_40cm_2_scaffold_1012_24
unknown

Not on your lists

comp(20041..20175)
DNA (135bp) protein (45aa)

This feature has no annotations

13_1_40cm_2_scaffold_1012_25
unknown

Not on your lists

20363..20530
DNA (168bp) protein (56aa)

This feature has no annotations

13_1_40cm_2_scaffold_1012_26
unknown

Not on your lists

20582..21241
DNA (660bp) protein (220aa)

This feature has no annotations

13_1_40cm_2_scaffold_1012_27
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

21356..21766
DNA (411bp) protein (137aa)
Uncharacterized protein {ECO:0000313|EMBL:KIJ71344.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
13_1_40cm_2_scaffold_1012_28
RBG_16_Chloroflexi_57_11_curated, Chloroflexi, Bacteria

Not on your lists

comp(23665..24120)
DNA (456bp) protein (152aa)
ksgA; dimethyladenosine transferase (EC:2.1.1.-); K02528 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] Tax=RBG_16_Chloroflexi_57_11_curated
ksgA; dimethyladenosine transferase (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase A id=4767748 bin=GWC2_Chloroflexi_73_18 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
13_1_40cm_2_scaffold_1012_29
unknown

Not on your lists

24389..24460
DNA (72bp) protein (24aa)

This feature has no annotations

Displaying 29 items

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