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13_1_40cm_2_scaffold_3516

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_3516_1
unknown

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comp(175..306)
DNA (132bp) protein (44aa)

This feature has no annotations

13_1_40cm_2_scaffold_3516_2
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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comp(355..1683)
DNA (1329bp) protein (443aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRB0_KORVE
two component, sigma54 specific, Fis family transcriptional regulator Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
Fis family transcriptional regulator
13_1_40cm_2_scaffold_3516_3
unknown

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comp(1738..2646)
DNA (909bp) protein (303aa)

This feature has no annotations

13_1_40cm_2_scaffold_3516_4
Spirochaeta sp. JC202, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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comp(2646..3011)
DNA (366bp) protein (122aa)
Uncharacterized protein {ECO:0000313|EMBL:KGM44294.1}; TaxID=1329640 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta sp. JC202.;"
13_1_40cm_2_scaffold_3516_5
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(3188..4225)
DNA (1038bp) protein (346aa)
PAS/PAC sensor signal transduction histidine kinase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PAS/PAC sensor signal transduction histidine kinase id=3730798 bin=GWF2_Nitrospirae_44_13 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
PAS/PAC sensor signal transduction histidine kinase
13_1_40cm_2_scaffold_3516_6
R_Acidobacteria_61_28, Acidobacteria, Bacteria

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comp(4222..5058)
DNA (837bp) protein (279aa)
type 4 prepilin peptidase 1 (EC:3.4.23.43); K02654 leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
peptidase A24A domain-containing protein; K02654 leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] id=15192505 bin=GWC2_NOV_55_46 species=Geobacter daltonii genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_NOV_55_46 organism_group=Proteobacteria
type 4 prepilin peptidase 1 (EC:3.4.23.43)
13_1_40cm_2_scaffold_3516_7
R_Acidobacteria_59_13, Acidobacteria, Bacteria

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comp(5058..5963)
DNA (906bp) protein (302aa)
Glycosyl transferase, family 2 n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRQ2_KORVE
glycosyl transferase family protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
glycosyl transferase family protein
13_1_40cm_2_scaffold_3516_8
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

Not on your lists

5979..6713
DNA (735bp) protein (245aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridy
tRNA pseudouridine synthase A n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SFD1_9BACT
truA; tRNA pseudouridine synthase A
13_1_40cm_2_scaffold_3516_9
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

6754..7533
DNA (780bp) protein (260aa)
undecaprenyl pyrophosphate synthetase (EC:2.5.1.31); K00806 undecaprenyl diphosphate synthase [EC:2.5.1.31] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
undecaprenyl pyrophosphate synthetase (EC:2.5.1.31); K00806 undecaprenyl diphosphate synthase [EC:2.5.1.31] id=12556752 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
undecaprenyl pyrophosphate synthetase (EC:2.5.1.31)
13_1_40cm_2_scaffold_3516_10
MPI_Marinimicrobia_46_47, SAR406, SAR406, Marinimicrobia (Marine group A), Bacteria

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7523..8332
DNA (810bp) protein (270aa)
hypothetical protein n=1 Tax=Nitrospina sp. SCGC AAA288-L16 RepID=UPI00036FE2FE
Phosphatidate cytidylyltransferase Tax=MPI_Marinimicrobia_46_47
cdsA; phosphatidate cytidylyltransferase
13_1_40cm_2_scaffold_3516_11
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

8329..9486
DNA (1158bp) protein (386aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267); K00099 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
dxr; 1-deoxy-D-xylulose-5-phosphate synthase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=DXR_THEYD rbh
13_1_40cm_2_scaffold_3516_12
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

9547..10884
DNA (1338bp) protein (446aa)
zinc metalloprotease; K11749 regulator of sigma E protease [EC:3.4.24.-] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
Peptidase M50, putative membrane-associated zinc metallopeptidase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRS8_KORVE
peptidase M50, membrane-associated zinc metallopeptidase
13_1_40cm_2_scaffold_3516_13
Desulfovibrio gigas, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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10881..11321
DNA (441bp) protein (147aa)
Putative Fur family transcriptional regulator n=1 Tax=Desulfovibrio gigas DSM 1382 = ATCC 19364 RepID=T2GB82_DESGI
putative Fur family transcriptional regulator
Putative Fur family transcriptional regulator {ECO:0000313|EMBL:AGW13434.1}; TaxID=1121448 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibri
13_1_40cm_2_scaffold_3516_14
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11370..12341)
DNA (972bp) protein (324aa)
4-hydroxythreonine-4-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154}; EC=1.1.1.262 {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154};; 4-(phosph
4-hydroxythreonine-4-phosphate dehydrogenase n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0CXH1_RHILT
4-hydroxythreonine-4-phosphate dehydrogenase
13_1_40cm_2_scaffold_3516_15
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

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comp(12364..12675)
DNA (312bp) protein (104aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02CR9_SOLUE
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
hypothetical protein
13_1_40cm_2_scaffold_3516_16
bacterium UASB270, Bacteria

Not on your lists

comp(12788..13771)
DNA (984bp) protein (328aa)
DNA polymerase III subunit delta' (EC:2.7.7.7)
DNA polymerase III, delta' subunit n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LH08_CHLTF
DNA polymerase III, delta prime subunit {ECO:0000313|EMBL:GAK56808.1}; TaxID=1499967 species="Bacteria.;" source="bacterium UASB270.;"
13_1_40cm_2_scaffold_3516_17
GWC2_Deltaproteobacteria_42_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13771..14382)
DNA (612bp) protein (204aa)
dTMP kinase (EC:2.7.4.9); K00943 dTMP kinase [EC:2.7.4.9] Tax=GWC2_Deltaproteobacteria_42_11_curated
tmk; Thymidylate kinase (EC:2.7.4.9)
Thymidylate kinase n=1 Tax=Desulfovibrio hydrothermalis AM13 = DSM 14728 RepID=L0RCW2_9DELT
13_1_40cm_2_scaffold_3516_18
RLO_PLX_64_10, Bacteria

Not on your lists

comp(14438..15622)
DNA (1185bp) protein (395aa)
thiI; thiamine biosynthesis protein thiI Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
Probable tRNA sulfurtransferase id=1969943 bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
tRNA sulfurtransferase
13_1_40cm_2_scaffold_3516_19
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

15795..16661
DNA (867bp) protein (289aa)
Probable DNA repair protein Cflav_PD3749 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGI1_9BACT
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphae
Ku domain-containing protein
13_1_40cm_2_scaffold_3516_20
Syntrophobacter fumaroxidans, Syntrophobacter, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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16742..17404
DNA (663bp) protein (221aa)
Alanine racemase domain protein n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LPE6_SYNFM
alanine racemase domain-containing protein
Alanine racemase domain protein {ECO:0000313|EMBL:ABK19298.1}; TaxID=335543 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophobacteraceae; Syntrophobacter.;" source
13_1_40cm_2_scaffold_3516_21
Coraliomargarita sp. CAG:312, Coraliomargarita, Puniceicoccales, Opitutae, Verrucomicrobia, Bacteria

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17401..17679
DNA (279bp) protein (93aa)
UPF0235 protein BN601_00362 n=1 Tax=Coraliomargarita sp. CAG:312 RepID=R7LEF2_9BACT
UPF0235 protein BN601_00362 {ECO:0000256|HAMAP-Rule:MF_00634}; TaxID=1262865 species="Bacteria; Verrucomicrobia; Opitutae; Puniceicoccales; Puniceicoccaceae; Coraliomargarita; environmental samples.;"
hypothetical protein
13_1_40cm_2_scaffold_3516_22
RBG_13_Aminicenantes_59_9_curated, Aminicenantes, Bacteria

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17679..18113
DNA (435bp) protein (145aa)
hypothetical protein n=2 Tax=unclassified Aminicenantes RepID=UPI0003B3607B
hypothetical protein Tax=RBG_13_Aminicenantes_59_9_curated
hypothetical protein
13_1_40cm_2_scaffold_3516_23
unknown

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18110..18253
DNA (144bp) protein (48aa)

This feature has no annotations

Displaying 23 items

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