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13_1_40cm_2_scaffold_5877

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_5877_1
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

3..1046
DNA (1044bp) protein (348aa)
hypothetical protein n=1 Tax=Methylotenera RepID=UPI000360DA5B
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
hypothetical protein
13_1_40cm_2_scaffold_5877_2
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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comp(1062..1496)
DNA (435bp) protein (145aa)
id=14627512 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
Tax=CSP1_6_Rokubacteria
13_1_40cm_2_scaffold_5877_3
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

1663..3528
DNA (1866bp) protein (622aa)
polyvinyl-alcohol dehydrogenase (EC:1.1.2.6)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TQ79_9BRAD
polyvinyl-alcohol dehydrogenase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
13_1_40cm_2_scaffold_5877_4
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3623..5350
DNA (1728bp) protein (576aa)
allB; allantoinase (EC:3.5.2.5)
Allantoinase {ECO:0000313|EMBL:CAN96039.1}; EC=3.5.2.5 {ECO:0000313|EMBL:CAN96039.1};; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; S
Allantoinase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9G8U4_SORC5
13_1_40cm_2_scaffold_5877_5
Myxococcus sp. (contaminant ex DSM 436), Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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5347..5676
DNA (330bp) protein (110aa)
5-hydroxyisourate hydrolase {ECO:0000256|RuleBase:RU361270}; Short=HIU hydrolase {ECO:0000256|RuleBase:RU361270};; Short=HIUHase {ECO:0000256|RuleBase:RU361270};; EC=3.5.2.17 {ECO:0000256|RuleBase:RU3
5-hydroxyisourate hydrolase n=1 Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2S2Y3_9DELT
transthyretin family protein
13_1_40cm_2_scaffold_5877_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(5677..6561)
DNA (885bp) protein (295aa)
hypothetical protein n=1 Tax=SAR406 cluster bacterium SCGC AB-629-J13 RepID=UPI00037159A6
hypothetical protein Tax=RBG_16_RIF_WS3X_71_46_curated
hypothetical protein
13_1_40cm_2_scaffold_5877_7
Meiothermus ruber, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

6804..7976
DNA (1173bp) protein (391aa)
amidase (EC:3.5.3.9)
hypothetical protein n=1 Tax=Meiothermus timidus RepID=UPI000364A444
Strain A contig00056, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ54169.1}; TaxID=277 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Meiothermus.;" source="Meiotherm
13_1_40cm_2_scaffold_5877_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7878..8546)
DNA (669bp) protein (223aa)
ribose-5-phosphate isomerase A (EC:5.3.1.6)
Ribose-5-phosphate isomerase A {ECO:0000255|HAMAP-Rule:MF_00170}; EC=5.3.1.6 {ECO:0000255|HAMAP-Rule:MF_00170};; Phosphoriboisomerase A {ECO:0000255|HAMAP-Rule:MF_00170}; Short=PRI {ECO:0000255|HAMAP-
Ribose-5-phosphate isomerase A n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=RPIA_RHOP2
13_1_40cm_2_scaffold_5877_9
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(8543..9094)
DNA (552bp) protein (184aa)
GTP cyclohydrolase (EC:3.5.4.16); K01495 GTP cyclohydrolase I [EC:3.5.4.16] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
folE; GTP cyclohydrolase I (EC:3.5.4.16)
GTP cyclohydrolase I n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI0003766E9C
13_1_40cm_2_scaffold_5877_10
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

9394..10134
DNA (741bp) protein (247aa)
endonuclease III / DNA-(apurinic or apyrimidinic site) lyase; K10773 endonuclease III [EC:4.2.99.18] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
Endonuclease III n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I5P3_CALAS
nth; DNA glycosylase/AP lyase
13_1_40cm_2_scaffold_5877_11
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

10249..10509
DNA (261bp) protein (87aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IMZ3_KORVE
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
hypothetical protein
13_1_40cm_2_scaffold_5877_12
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

10797..12302
DNA (1506bp) protein (502aa)
leucyl aminopeptidase (EC:3.4.11.1); K01255 leucyl aminopeptidase [EC:3.4.11.1] Tax=RBG_16_Acidobacteria_70_10_curated
Probable cytosol aminopeptidase n=1 Tax=Thermovibrio ammonificans (strain DSM 15698 / JCM 12110 / HB-1) RepID=E8T3K5_THEA1
peptidase M17 leucyl aminopeptidase domain protein
13_1_40cm_2_scaffold_5877_13
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

12283..12528
DNA (246bp) protein (82aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037CFF76
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
hypothetical protein
13_1_40cm_2_scaffold_5877_14
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

12566..14086
DNA (1521bp) protein (507aa)
3-isopropylmalate dehydratase large subunit {ECO:0000313|EMBL:CDM66448.1}; EC=4.2.1.33 {ECO:0000313|EMBL:CDM66448.1};; EC=4.2.1.35 {ECO:0000313|EMBL:CDM66448.1};; TaxID=454194 species="Bacteria; Acido
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4YC07_SORCE
hypothetical protein
13_1_40cm_2_scaffold_5877_15
unknown

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comp(14083..14490)
DNA (408bp) protein (136aa)

This feature has no annotations

13_1_40cm_2_scaffold_5877_16
unknown

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14738..14866
DNA (129bp) protein (43aa)

This feature has no annotations

13_1_40cm_2_scaffold_5877_17
RBG_16_Euryarchaeota_68_12_curated, Euryarchaeota, Archaea

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15067..15402
DNA (336bp) protein (112aa)
6-pyruvoyl tetrahydrobiopterin synthase; K01737 6-pyruvoyl tetrahydrobiopterin synthase [EC:4.2.3.12] Tax=RBG_16_Euryarchaeota_68_12_curated
ptpS; putative 6-pyruvoyl-tetrahydropterin synthase (EC:4.2.3.12)
Putative 6-pyruvoyl-tetrahydropterin synthase n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W7U3_UNCMA
13_1_40cm_2_scaffold_5877_18
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

15399..16319
DNA (921bp) protein (307aa)
ABC-type Fe3+-hydroxamate transport system, periplasmic component {ECO:0000313|EMBL:CDM66699.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyri
periplasmic binding protein; K02016 iron complex transport system substrate-binding protein id=14426698 bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
periplasmic binding protein
13_1_40cm_2_scaffold_5877_19
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16349..16543
DNA (195bp) protein (65aa)
Tetratricopeptide repeat protein {ECO:0000313|EMBL:AFD06975.1}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea
13_1_40cm_2_scaffold_5877_20
R_RIF_OD1_12_45_13b, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(16668..18329)
DNA (1662bp) protein (554aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2ALW1_9BACT
thymidylate synthase complementing protein ThyX Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_12_45_13b_curated
thymidylate synthase complementing protein ThyX
13_1_40cm_2_scaffold_5877_21
Geobacter bemidjiensis, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18528..21158)
DNA (2631bp) protein (877aa)
DNA ligase D, ATP-dependent n=1 Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=B5E922_GEOBB
ligD; DNA ligase D
DNA ligase D, ATP-dependent {ECO:0000313|EMBL:ACH37159.1}; TaxID=404380 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter bemid
13_1_40cm_2_scaffold_5877_22
unknown

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comp(21163..21663)
DNA (501bp) protein (167aa)

This feature has no annotations

Displaying 22 items

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