ggKbase home page

13_1_40cm_2_scaffold_701

Search features with annotation key words

Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_701_1
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

973..1647
DNA (675bp) protein (225aa)
two component signal transduction response regulator; K07665 two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR Tax=RBG_16_Deltaproteobacteria_54_11_curated
transcriptional regulator
Response regulator receiver domain protein (CheY-like) id=4815915 bin=GWC2_Deltaproteobacteria_55_46 species=Mariprofundus ferrooxydans genus=Mariprofundus taxon_order=Mariprofundales taxon_class=Zetaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_55_46 organism_group=Deltaproteobacteria organism_desc=Clade sibling to the Geobacter/Pelobacter
13_1_40cm_2_scaffold_701_2
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1644..3077
DNA (1434bp) protein (478aa)
heavy metal sensor signal transduction histidine kinase (EC:2.7.3.-); K00936 [EC:2.7.3.-] Tax=RBG_13_Deltaproteobacteria_52_11_curated
Heavy metal sensor signal transduction histidine kinase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q026B4_SOLUE
heavy metal sensor signal transduction histidine kinase
13_1_40cm_2_scaffold_701_3
unknown

Not on your lists

3292..3693
DNA (402bp) protein (134aa)

This feature has no annotations

13_1_40cm_2_scaffold_701_4
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

3851..4183
DNA (333bp) protein (111aa)
glutamine amidotransferase n=1 Tax=Spirosoma spitsbergense RepID=UPI0003768083
PfpI family intracellular protease
Intracellular protease, PfpI family {ECO:0000313|EMBL:ADB42304.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (stra
13_1_40cm_2_scaffold_701_5
RLO_PLX_64_10, Bacteria

Not on your lists

comp(4184..4684)
DNA (501bp) protein (167aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRW2_KORVE
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
hypothetical protein
13_1_40cm_2_scaffold_701_6

Not on your lists

comp(4702..5442)
DNA (741bp) protein (247aa)
fumarate reductase n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI00036EB43A
fumarate reductase iron-sulfur subunit
Fumarate reductase {ECO:0000313|EMBL:AHN97959.1}; TaxID=1447241 species="Bacteria; environmental samples.;" source="uncultured bacterium lac160.;"
13_1_40cm_2_scaffold_701_7

Not on your lists

comp(5442..7268)
DNA (1827bp) protein (609aa)
Succinate dehydrogenase subunit A n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRW4_KORVE
Succinate dehydrogenase flavoprotein subunit {ECO:0000313|EMBL:AHN97958.1}; TaxID=1447241 species="Bacteria; environmental samples.;" source="uncultured bacterium lac160.;"
fumarate reductase/succinate dehydrogenase flavoprotein domain protein
13_1_40cm_2_scaffold_701_8
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(7268..8065)
DNA (798bp) protein (266aa)
Putative integral membrane protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRW5_KORVE
integral membrane protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
hypothetical protein
13_1_40cm_2_scaffold_701_9
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(8122..9087)
DNA (966bp) protein (322aa)
Alcohol dehydrogenase GroES domain protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q028K3_SOLUE
alcohol dehydrogenase
Alcohol dehydrogenase GroES domain protein {ECO:0000313|EMBL:ABJ82549.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source=
13_1_40cm_2_scaffold_701_10
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

9254..9799
DNA (546bp) protein (182aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01VL8_SOLUE
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
hypothetical protein
13_1_40cm_2_scaffold_701_11
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

9866..10180
DNA (315bp) protein (105aa)
serine/threonine protein kinase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
13_1_40cm_2_scaffold_701_12
unknown

Not on your lists

10196..10300
DNA (105bp) protein (35aa)

This feature has no annotations

13_1_40cm_2_scaffold_701_13
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

10323..10718
DNA (396bp) protein (132aa)
Uncharacterized protein {ECO:0000313|EMBL:BAM00988.1}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 1
13_1_40cm_2_scaffold_701_14
unknown

Not on your lists

comp(10783..11091)
DNA (309bp) protein (103aa)

This feature has no annotations

13_1_40cm_2_scaffold_701_15
gamma proteobacterium NOR5-3, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11297..12898
DNA (1602bp) protein (534aa)
amidase (EC:3.5.1.4)
glutamyl-tRNA amidotransferase subunit A n=1 Tax=Nevskia ramosa RepID=UPI0003B673A6 rbh
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000313|EMBL:EED33721.1}; TaxID=566466 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium NOR5-3.;"
13_1_40cm_2_scaffold_701_16
Desulfococcus multivorans, Desulfococcus, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12950..14878
DNA (1929bp) protein (643aa)
Propionate--CoA ligase (Propionyl-CoA synthetase) (EC:6.2.1.17)
AMP-dependent synthetase and ligase n=1 Tax=Desulfococcus multivorans DSM 2059 RepID=S7TPU0_DESML
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:EPR38971.1}; TaxID=1121405 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfococcus.;" source=
13_1_40cm_2_scaffold_701_17
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

comp(14875..16239)
DNA (1365bp) protein (455aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00037F78D5
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
hypothetical protein
13_1_40cm_2_scaffold_701_18
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(16347..17969)
DNA (1623bp) protein (541aa)
groEL; chaperonin GroEL; K04077 chaperonin GroEL Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
groEL; chaperonin GroEL; K04077 chaperonin GroEL id=12554189 bin=CNBR_ACIDO species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
groEL; molecular chaperone GroEL
13_1_40cm_2_scaffold_701_19
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(17979..18293)
DNA (315bp) protein (105aa)
10 kDa chaperonin n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01RQ3_SOLUE
groES; chaperonin, 10 kDa; K04078 chaperonin GroES Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
chaperonin Cpn10
13_1_40cm_2_scaffold_701_20
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(18403..19947)
DNA (1545bp) protein (515aa)
Putative aminopeptidase n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8KYP2_FRAAD
peptidase M28 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
putative aminopeptidase
13_1_40cm_2_scaffold_701_21
CG_Delta_05, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19931..20623)
DNA (693bp) protein (231aa)
Lysine decarboxylase family n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LWS8_SYNAS
hypothetical protein; K06966 Tax=CG_Delta_05
lysine decarboxylase family protein
13_1_40cm_2_scaffold_701_22
unknown

Not on your lists

20697..20849
DNA (153bp) protein (51aa)

This feature has no annotations

13_1_40cm_2_scaffold_701_23
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(20853..21557)
DNA (705bp) protein (235aa)
DNA replication protein, DNAC-like protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IVN5_KORVE
IstB domain-containing protein ATP-binding protein; K02315 DNA replication protein DnaC Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
DNA replication protein, DNAC-like
13_1_40cm_2_scaffold_701_24
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

comp(21706..22563)
DNA (858bp) protein (286aa)
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1312852 species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.
hypothetical protein id=8266551 bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
sigma-70 family RNA polymerase sigma factor
13_1_40cm_2_scaffold_701_25
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(22592..22786)
DNA (195bp) protein (65aa)
MerR family transcriptional regulator; K13640 MerR family transcriptional regulator, heat shock protein HspR Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
13_1_40cm_2_scaffold_701_26
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

Not on your lists

comp(22938..23438)
DNA (501bp) protein (167aa)
Chaperone protein DnaJ n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SIW3_9BACT
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152}; TaxID=171953 species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium.;"
molecular chaperone DnaJ
13_1_40cm_2_scaffold_701_27
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(23435..23989)
DNA (555bp) protein (185aa)
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas
hypothetical protein id=8266553 bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
chaperone protein DnaJ
13_1_40cm_2_scaffold_701_28
bacterium UASB270, Bacteria

Not on your lists

comp(24261..26183)
DNA (1923bp) protein (641aa)
molecular chaperone DnaK n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00036C276F rbh
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP
dnaK; molecular chaperone DnaK
13_1_40cm_2_scaffold_701_29
unknown

Not on your lists

comp(26460..27161)
DNA (702bp) protein (234aa)

This feature has no annotations

13_1_40cm_2_scaffold_701_30
BJP_IG2102_Ignavibacteriales_35_8, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

27424..27756
DNA (333bp) protein (111aa)
Putative uncharacterized protein id=4834517 bin=GWC2_Ignavibacteria_56_12 species=Chloroherpeton thalassium genus=Chloroherpeton taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
hypothetical protein
Tax=BJP_IG2102_Ignavibacteriales_35_8
Displaying items 1-30 of 55 in total

View Taxonomy