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13_1_40cm_2_scaffold_2163

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_2163_1
RBG_16_Archaea_50_20_curated, Archaea

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2..568
DNA (567bp) protein (189aa)
30S ribosomal protein S3Ae n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N5A0_9ARCH
30S ribosomal protein S3Ae; K02984 small subunit ribosomal protein S3Ae Tax=RBG_16_Archaea_50_20_curated
small subunit ribosomal protein S3Ae
13_1_40cm_2_scaffold_2163_2
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

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848..1918
DNA (1071bp) protein (357aa)
phosphoglucosamine mutase (EC:5.4.2.10); K03431 phosphoglucosamine mutase [EC:5.4.2.10] Tax=RBG_16_Bathyarchaeota_48_13_curated
phosphoglucosamine mutase (EC:5.4.2.10)
Phosphoglucosamine mutase n=1 Tax=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) RepID=GLMM_METVS
13_1_40cm_2_scaffold_2163_3
RBG_16_Archaea_50_20_curated, Archaea

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1919..3163
DNA (1245bp) protein (415aa)
glucose-1-phosphate thymidylyltransferase; K04042 bifunctional UDP-N-acetylglucosamine pyrophosphorylase / Glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] Tax=RBG_16_Archaea_50_20_
Glucose-1-phosphate thymidylyltransferase n=1 Tax=Pyrococcus sp. (strain NA2) RepID=F4HME3_PYRSN
glucose-1-phosphate thymidylyltransferase
13_1_40cm_2_scaffold_2163_4
unknown

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3319..3645
DNA (327bp) protein (109aa)

This feature has no annotations

13_1_40cm_2_scaffold_2163_5
unknown

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3599..3934
DNA (336bp) protein (112aa)

This feature has no annotations

13_1_40cm_2_scaffold_2163_6
RBG_16_Archaea_50_20_curated, Archaea

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comp(3970..5175)
DNA (1206bp) protein (402aa)
Putative GTPase n=1 Tax=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) RepID=Q975G0_SULTO
GTP binding protein Tax=RBG_16_Archaea_50_20_curated
ychF; translation-associated GTPase
13_1_40cm_2_scaffold_2163_7
RBG_16_Archaea_50_20_curated, Archaea

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comp(5191..5685)
DNA (495bp) protein (165aa)
reduced coenzyme f420:nadp oxidoreductase (EC:1.6.99.-)
Reduced coenzyme F420:NADP oxidoreductase n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GWR0_METFV
dinucleotide-binding protein; K06988 Tax=RBG_16_Archaea_50_20_curated
13_1_40cm_2_scaffold_2163_8
RBG_16_Archaea_50_20_curated, Archaea

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comp(5878..7233)
DNA (1356bp) protein (452aa)
NADP-dependent malic enzyme n=1 Tax=Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 RepID=R9T8J1_9EURY
NADP-dependent malic enzyme Tax=RBG_16_Archaea_50_20_curated
NADP-dependent malic enzyme
13_1_40cm_2_scaffold_2163_9
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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7361..7783
DNA (423bp) protein (141aa)
50S ribosomal protein L15e n=2 Tax=Candidatus Nitrososphaera gargensis RepID=K0IDZ5_NITGG
rpl15e; 50S ribosomal protein L15e
R-protein L15e {ECO:0000313|EMBL:ADK26033.1}; Flags: Fragment;; TaxID=497727 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candida
13_1_40cm_2_scaffold_2163_10
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

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7860..8870
DNA (1011bp) protein (337aa)
Uncharacterized protein n=1 Tax=Thermofilum sp. 1910b RepID=S5ZVR1_9CREN
hypothetical protein Tax=RBG_13_Bathyarchaeota_38_9_curated
hypothetical protein
13_1_40cm_2_scaffold_2163_11

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comp(8864..9667)
DNA (804bp) protein (268aa)
Isopentenyl phosphate kinase n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W8D3_UNCMA
Marine sediment metagenome DNA, contig: S06H3_C02602 {ECO:0000313|EMBL:GAH94013.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
amino acid kinase
13_1_40cm_2_scaffold_2163_12
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

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10013..10753
DNA (741bp) protein (247aa)
Hypothetical conserved protein n=1 Tax=uncultured crenarchaeote RepID=H5SJ42_9CREN
circadian clock protein KaiC Tax=RBG_16_Bathyarchaeota_48_13_curated
hypothetical protein
13_1_40cm_2_scaffold_2163_13
RBG_16_Archaea_50_20_curated, Archaea

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10773..11840
DNA (1068bp) protein (356aa)
Putative circadian clock protein, KaiC n=1 Tax=Thermofilum pendens (strain Hrk 5) RepID=A1S0H8_THEPD
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
recombinase RecA
13_1_40cm_2_scaffold_2163_14
RBG_16_Archaea_50_20_curated, Archaea

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comp(11837..12601)
DNA (765bp) protein (255aa)
putative circadian clock protein KaiC (EC:2.7.11.1)
Hypothetical conserved protein n=1 Tax=uncultured crenarchaeote RepID=H5SJ42_9CREN
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
13_1_40cm_2_scaffold_2163_15
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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12691..13692
DNA (1002bp) protein (334aa)
Uncharacterized protein n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IH89_NITGG
hypothetical protein Tax=RBG_13_Bathyarchaeota_46_16b_curated
hypothetical protein
13_1_40cm_2_scaffold_2163_16
unknown

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13766..13960
DNA (195bp) protein (65aa)

This feature has no annotations

13_1_40cm_2_scaffold_2163_17
unknown

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comp(13917..14204)
DNA (288bp) protein (96aa)

This feature has no annotations

13_1_40cm_2_scaffold_2163_18
unknown

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14314..15855
DNA (1542bp) protein (514aa)

This feature has no annotations

13_1_40cm_2_scaffold_2163_19
unknown

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15942..16241
DNA (300bp) protein (100aa)

This feature has no annotations

13_1_40cm_2_scaffold_2163_20
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

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comp(16215..16580)
DNA (366bp) protein (122aa)
peptidyl-tRNA hydrolase; K04794 peptidyl-tRNA hydrolase, PTH2 family [EC:3.1.1.29] Tax=RBG_13_Bathyarchaeota_46_16b_curated
Peptidyl-tRNA hydrolase n=1 Tax=Thermococcus barophilus (strain DSM 11836 / MP) RepID=F0LL75_THEBM
peptidyl-tRNA hydrolase
13_1_40cm_2_scaffold_2163_21
unknown

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16810..17136
DNA (327bp) protein (109aa)

This feature has no annotations

13_1_40cm_2_scaffold_2163_22
RBG_16_Archaea_50_20_curated, Archaea

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17344..18018
DNA (675bp) protein (225aa)
psmA; proteasome subunit alpha (EC:3.4.25.1); K03432 proteasome alpha subunit [EC:3.4.25.1] Tax=RBG_16_Archaea_50_20_curated
proteasome alpha subunit (EC:3.4.25.1)
Proteasome alpha subunit n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N8Y4_9ARCH
13_1_40cm_2_scaffold_2163_23
RBG_16_Archaea_50_20_curated, Archaea

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18015..18704
DNA (690bp) protein (230aa)
Putative ribosome maturation protein SDO1 n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJH0_NITGG
ribosome maturation protein SDO1 Tax=RBG_16_Archaea_50_20_curated
ribosome maturation protein SDO1
13_1_40cm_2_scaffold_2163_24
RBG_16_Archaea_50_20_curated, Archaea

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18720..19433
DNA (714bp) protein (238aa)
Exosome complex component Rrp4 n=1 Tax=Methanobacterium formicicum DSM 3637 RepID=K2RB40_METFO
KH domain containing protein; K03679 exosome complex component RRP4 Tax=RBG_16_Archaea_50_20_curated
exosome complex RNA-binding protein Rrp4
13_1_40cm_2_scaffold_2163_25
RBG_16_Archaea_50_20_curated, Archaea

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19411..20178
DNA (768bp) protein (256aa)
Exosome complex component Rrp41 n=1 Tax=Pyrolobus fumarii (strain DSM 11204 / 1A) RepID=G0ECM9_PYRF1
rph; exosome complex exonuclease Rrp41; K11600 exosome complex component RRP41 Tax=RBG_16_Archaea_50_20_curated
exosome complex exonuclease 1
13_1_40cm_2_scaffold_2163_26
RBG_16_Archaea_50_20_curated, Archaea

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20178..20996
DNA (819bp) protein (273aa)
Exosome complex component Rrp42 n=1 Tax=Pyrococcus yayanosii (strain CH1 / JCM 16557) RepID=F8AH19_PYRYC
exosome complex RNA-binding protein Rrp42; K12589 exosome complex component RRP42 Tax=RBG_16_Archaea_50_20_curated
exosome complex RNA-binding protein Rrp42
Displaying 26 items

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