ggKbase home page

13_1_40cm_2_scaffold_333

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_333_1
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(210..509)
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Pyrolobus fumarii (strain DSM 11204 / 1A) RepID=G0EDK7_PYRF1
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
hypothetical protein
13_1_40cm_2_scaffold_333_2
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(520..927)
DNA (408bp) protein (136aa)
Translation initiation factor 2 subunit beta n=1 Tax=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) RepID=IF2B_METTH
eIF2B; translation initiation factor aIF-2, beta subunit; K03238 translation initiation factor 2 subunit 2 Tax=RBG_16_Archaea_50_20_curated
translation initiation factor IF-2
13_1_40cm_2_scaffold_333_3
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


938..2665
DNA (1728bp) protein (576aa)
methionyl-tRNA synthetase; K01874 methionyl-tRNA synthetase [EC:6.1.1.10] Tax=RBG_16_Archaea_50_20_curated
Methionine--tRNA ligase n=1 Tax=Pyrolobus fumarii (strain DSM 11204 / 1A) RepID=G0EE63_PYRF1
methionyl-tRNA synthetase
13_1_40cm_2_scaffold_333_4
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

2673..3266
DNA (594bp) protein (198aa)
PHP domain protein n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GW18_METFV
php domain protein; K07053 Tax=RBG_16_Archaea_50_20_curated
php domain-containing protein
13_1_40cm_2_scaffold_333_5
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

Not on your lists

comp(3275..4318)
DNA (1044bp) protein (348aa)
Cell division protein FtsZ n=1 Tax=Methanococcus voltae (strain ATCC BAA-1334 / A3) RepID=D7DUC9_METV3
cell division protein FtsZ; K03531 cell division protein FtsZ Tax=RBG_16_Bathyarchaeota_48_13_curated
cell division protein FtsZ
13_1_40cm_2_scaffold_333_6
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(4475..6058)
DNA (1584bp) protein (528aa)
glycine dehydrogenase subunit 2; K00283 glycine dehydrogenase subunit 2 [EC:1.4.4.2] Tax=RBG_16_Archaea_50_20_curated
glycine dehydrogenase subunit 2 (EC:1.4.4.2)
Probable glycine dehydrogenase (decarboxylating) subunit 2 n=1 Tax=Thermococcus litoralis DSM 5473 RepID=H3ZMA3_THELI
13_1_40cm_2_scaffold_333_7
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(6064..7398)
DNA (1335bp) protein (445aa)
glycine dehydrogenase subunit 1 (EC:1.4.4.2); K00282 glycine dehydrogenase subunit 1 [EC:1.4.4.2] Tax=RBG_16_Archaea_50_20_curated
glycine dehydrogenase (EC:1.4.4.2)
Glycine dehydrogenase (Decarboxylating) n=1 Tax=Desulfurococcus fermentans DSM 16532 RepID=I3XRJ5_9CREN
13_1_40cm_2_scaffold_333_8
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

Not on your lists

7549..8595
DNA (1047bp) protein (349aa)
Putative glycosyl transferase, family 4 n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IDG1_NITGG
glycosyl transferase, family 4 Tax=RBG_16_Thaumarchaeota_49_8_curated
glycosyl transferase, family 4
13_1_40cm_2_scaffold_333_9
unknown

Not on your lists

8592..8834
DNA (243bp) protein (81aa)

This feature has no annotations

13_1_40cm_2_scaffold_333_10
RBG_13_Lokiarchaeota_45_8_curated, Lokiarchaeota, Archaea

Not on your lists

comp(8844..9914)
DNA (1071bp) protein (357aa)
hypothetical protein; K01955 carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] Tax=RBG_13_Lokiarchaeota_45_8_curated
hypothetical protein n=1 Tax=Amycolatopsis nigrescens RepID=UPI00036F468D
hypothetical protein
13_1_40cm_2_scaffold_333_11
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

10014..11759
DNA (1746bp) protein (582aa)
Tax=RBG_13_Bathyarchaeota_38_9_curated
13_1_40cm_2_scaffold_333_12
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

11779..13026
DNA (1248bp) protein (416aa)
Tax=RBG_16_Archaea_50_20_curated
13_1_40cm_2_scaffold_333_13
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(13237..14157)
DNA (921bp) protein (307aa)
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; TaxID=1129897 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterine
thioredoxin-disulfide reductase (EC:1.8.1.9)
Thioredoxin reductase n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EK54_9CHLR
13_1_40cm_2_scaffold_333_14
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

14279..14932
DNA (654bp) protein (218aa)
Putative uncharacterized protein n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N446_9ARCH
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
hypothetical protein
13_1_40cm_2_scaffold_333_15
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15159..15746
DNA (588bp) protein (196aa)
Rhodanese-like protein n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q121R6_POLSJ
rhodanese domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
rhodanese-like protein
13_1_40cm_2_scaffold_333_16
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

comp(15771..16685)
DNA (915bp) protein (305aa)
Hypothetical conserved protein n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N3B3_9ARCH
hypothetical protein Tax=RBG_13_Bathyarchaeota_38_9_curated
hypothetical protein
13_1_40cm_2_scaffold_333_17
RBG_16_Bathyarchaeota_48_13_curated, Bathyarchaeota, Archaea

Not on your lists

16730..17911
DNA (1182bp) protein (394aa)
Hypothetical conserved protein n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N3B4_9ARCH
hypothetical protein Tax=RBG_16_Bathyarchaeota_48_13_curated
hypothetical protein
13_1_40cm_2_scaffold_333_18
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

17911..18630
DNA (720bp) protein (240aa)
Uracil-DNA glycosylase superfamily n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F2R1_CONWI
uracil-DNA glycosylase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
uracil-DNA glycosylase superfamily
13_1_40cm_2_scaffold_333_19
unknown

Not on your lists

18735..19232
DNA (498bp) protein (166aa)

This feature has no annotations

13_1_40cm_2_scaffold_333_20
unknown

Not on your lists

comp(19515..19781)
DNA (267bp) protein (89aa)

This feature has no annotations

13_1_40cm_2_scaffold_333_21
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(19983..21641)
DNA (1659bp) protein (553aa)
Putative permease (DUF2074) n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I7G4_METCZ
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
permease
13_1_40cm_2_scaffold_333_22
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(21638..22414)
DNA (777bp) protein (259aa)
ABC-type multidrug transport system, ATPase component n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I7G5_METCZ
multidrug ABC transporter ATPase Tax=RBG_16_Archaea_50_20_curated
multidrug ABC transporter ATPase
13_1_40cm_2_scaffold_333_23
unknown

Not on your lists

comp(22504..23334)
DNA (831bp) protein (277aa)

This feature has no annotations

Displaying 23 items

View Taxonomy