ggKbase home page

13_1_40cm_2_scaffold_27062

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_27062_1
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..297
DNA (297bp) protein (99aa)
Putative aminoglycoside 6'-N-acetyltransferase/phosphoglycolate phosphatase n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HLU9_RUBGI
putative aminoglycoside 6'-N-acetyltransferase/phosphoglycolate phosphatase
Putative aminoglycoside 6'-N-acetyltransferase/phosphoglycolate phosphatase {ECO:0000313|EMBL:BAL93986.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubriviv
13_1_40cm_2_scaffold_27062_trna_1
unknown

Not on your lists

comp(455..528)
DNA (74bp)
transferRNA
13_1_40cm_2_scaffold_27062_2
unknown

Not on your lists

669..2000
DNA (1332bp) protein (444aa)

This feature has no annotations

13_1_40cm_2_scaffold_27062_3
RBG_16_Thaumarchaeota_49_8_curated, Thaumarchaeota, TACK, Archaea

Not on your lists

comp(1997..2464)
DNA (468bp) protein (156aa)
mgsA; methylglyoxal synthase (EC:4.2.3.3)
Methylglyoxal synthase n=1 Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LVE0_ACIC1
methylglyoxal synthase Tax=RBG_16_Thaumarchaeota_49_8_curated
13_1_40cm_2_scaffold_27062_4
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2510..3169)
DNA (660bp) protein (220aa)
rpe; ribulose-phosphate 3-epimerase (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q090R7_STIAD
Ribulose-phosphate 3-epimerase {ECO:0000313|EMBL:AKF10063.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="
13_1_40cm_2_scaffold_27062_5
Anaeromyxobacter dehalogenans, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3166..5502)
DNA (2337bp) protein (779aa)
NusB/RsmB/TIM44 n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8J9P4_ANAD2 rbh
NusB/RsmB/TIM44
NusB/RsmB/TIM44 {ECO:0000313|EMBL:ACL67432.1}; TaxID=455488 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="A
13_1_40cm_2_scaffold_27062_6
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5778..5945
DNA (168bp) protein (56aa)
anthranilate synthase component I (EC:4.1.3.27); K01657 anthranilate synthase component I [EC:4.1.3.27] Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
13_1_40cm_2_scaffold_27062_7
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

6507..7535
DNA (1029bp) protein (343aa)
trpD; anthranilate phosphoribosyltransferase (EC:2.4.2.18) Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
trpD; anthranilate phosphoribosyltransferase (EC:2.4.2.18) id=14626074 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
anthranilate phosphoribosyltransferase
13_1_40cm_2_scaffold_27062_8
Tetrasphaera jenkinsii, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7532..8269
DNA (738bp) protein (246aa)
Indole-3-glycerol phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046689}; Short=IGPS {ECO:0000256|HAMAP-Rule:MF_00134};; EC=4.1.1.48 {ECO:0000256|HAMAP-Rule:MF_00134, ECO:
indole-3-glycerol phosphate synthase (EC:4.1.1.48)
indole-3-glycerol-phosphate synthase n=1 Tax=Longispora albida RepID=UPI00036A2A40
13_1_40cm_2_scaffold_27062_9
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

8266..8859
DNA (594bp) protein (198aa)
N-(5'-phosphoribosyl)anthranilate isomerase; K01817 phosphoribosylanthranilate isomerase [EC:5.3.1.24] Tax=RBG_16_Acidobacteria_70_10_curated
N-(5'-phosphoribosyl)anthranilate isomerase n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7H791_ANADF
phosphoribosylanthranilate isomerase
13_1_40cm_2_scaffold_27062_10
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8856..10061
DNA (1206bp) protein (402aa)
tryptophan synthase subunit beta; K01696 tryptophan synthase beta chain [EC:4.2.1.20] Tax=RBG_16_Anaeromyxobacter_69_14_curated
Tryptophan synthase beta chain n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7H790_ANADF rbh
tryptophan synthase subunit beta
13_1_40cm_2_scaffold_27062_11
Moorella glycerini, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

10058..10819
DNA (762bp) protein (254aa)
Tryptophan synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|SAAS:SAAS00031177}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|SAAS:SAAS00108586};; TaxID=55779 species="Ba
tryptophan synthase subunit alpha (EC:4.2.1.20)
Tryptophan synthase alpha chain n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RIU0_MOOTA
13_1_40cm_2_scaffold_27062_12
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10826..12058)
DNA (1233bp) protein (411aa)
Glycosyl transferase family 2 n=1 Tax=Tetrasphaera elongata Lp2 RepID=N0E306_9MICO
group 1 glycosyl transferase Tax=RBG_16_Anaeromyxobacter_69_14_curated
group 1 glycosyl transferase
13_1_40cm_2_scaffold_27062_13
S_OP1_64_32, KB1, Bacteria

Not on your lists

comp(12055..12477)
DNA (423bp) protein (141aa)
3-dehydroquinate synthase Tax=S_OP1_64_32
3-dehydroquinate dehydratase id=3677719 bin=GWA2_Elusimicrobia_69_24 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
3-dehydroquinate dehydratase
13_1_40cm_2_scaffold_27062_14
S_OP1_64_32, KB1, Bacteria

Not on your lists

comp(12489..13556)
DNA (1068bp) protein (356aa)
3-dehydroquinate synthase n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SVD7_9BACT
3-dehydroquinate synthase Tax=S_OP1_64_32
3-dehydroquinate synthase
13_1_40cm_2_scaffold_27062_15
Rhodococcus qingshengii, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13543..15243)
DNA (1701bp) protein (567aa)
Chorismate synthase {ECO:0000256|RuleBase:RU000605}; EC=4.2.3.5 {ECO:0000256|RuleBase:RU000605};; TaxID=334542 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source
Chorismate synthase id=2027079 bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
chorismate synthase
13_1_40cm_2_scaffold_27062_16
Desulfobacterium autotrophicum, Desulfobacterium, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15240..16001)
DNA (762bp) protein (254aa)
aroE1; hypothetical protein (EC:1.1.1.25)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000
Shikimate dehydrogenase n=1 Tax=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) RepID=C0QEK5_DESAH
13_1_40cm_2_scaffold_27062_17
Ammonifex degensii, Ammonifex, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16001..17353)
DNA (1353bp) protein (451aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyru
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9RDE0_AMMDK
3-phosphoshikimate 1-carboxyvinyltransferase
Displaying 18 items

View Taxonomy