ggKbase home page

13_1_40cm_2_scaffold_4184

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_4184_1
Myxococcus stipitatus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..255)
DNA (255bp) protein (85aa)
Chemotaxis sensor histidine kinase/response regulator n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UNB0_MYXSD
chemotaxis sensor histidine kinase/response regulator
Chemotaxis sensor histidine kinase/response regulator {ECO:0000313|EMBL:AGC47929.1}; TaxID=1278073 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae
13_1_40cm_2_scaffold_4184_2
Myxococcus sp. (contaminant ex DSM 436), Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(255..791)
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8CJV6_MYXFH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERK90131.1}; TaxID=1297742 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxoco
13_1_40cm_2_scaffold_4184_3
unknown

Not on your lists

comp(788..952)
DNA (165bp) protein (55aa)

This feature has no annotations

13_1_40cm_2_scaffold_4184_4
Myxococcus sp. (contaminant ex DSM 436), Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1915..2379)
DNA (465bp) protein (155aa)
Putative response regulator/chemotaxis protein CheW n=1 Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2U5E0_9DELT
Putative response regulator/chemotaxis protein CheW {ECO:0000313|EMBL:ERK90133.1}; TaxID=1297742 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae;
putative response regulator/chemotaxis protein CheW
13_1_40cm_2_scaffold_4184_5
Myxococcus stipitatus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2725..3105)
DNA (381bp) protein (127aa)
Putative chemotaxis protein CheY n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MUP2_CORCM
chemotaxis protein CheY
Chemotaxis protein CheY {ECO:0000313|EMBL:AGC47933.1}; TaxID=1278073 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxoco
13_1_40cm_2_scaffold_4184_6
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(3193..4164)
DNA (972bp) protein (324aa)
Quinone oxidoreductase putative PIG3 n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NID5_ROSCS
quinone oxidoreductase PIG3
Quinone oxidoreductase putative PIG3 {ECO:0000313|EMBL:ABU57235.1}; TaxID=383372 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Ro
13_1_40cm_2_scaffold_4184_7
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4194..5048
DNA (855bp) protein (285aa)
Periplasmic binding protein n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LRG8_HALO1 rbh
Vitamin B12 ABC transporter, B12-binding component BtuF {ECO:0000313|EMBL:EYF01014.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae;
periplasmic binding protein
13_1_40cm_2_scaffold_4184_8
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

5045..6448
DNA (1404bp) protein (468aa)
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
13_1_40cm_2_scaffold_4184_9
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6549..8126)
DNA (1578bp) protein (526aa)
Signal recognition particle protein n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UJJ7_MYXSD rbh
Signal recognition particle {ECO:0000313|EMBL:AKF82614.1}; TaxID=1334629 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="My
signal recognition particle protein
13_1_40cm_2_scaffold_4184_10
Anaeromyxobacter dehalogenans, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8173..8787
DNA (615bp) protein (205aa)
DedA n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2ILZ0_ANADE
hypothetical protein
DedA {ECO:0000313|EMBL:ABC79823.1}; Flags: Precursor;; TaxID=290397 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" s
13_1_40cm_2_scaffold_4184_trna_1
unknown

Not on your lists

comp(8812..8895)
DNA (84bp)
transferRNA
13_1_40cm_2_scaffold_4184_11
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8999..11875
DNA (2877bp) protein (959aa)
2-oxoglutarate dehydrogenase E1 n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4Y833_SORCE rbh
2-oxoglutarate dehydrogenase E1 {ECO:0000313|EMBL:AGP39038.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sor
2-oxoglutarate dehydrogenase E1
13_1_40cm_2_scaffold_4184_12
Chthonomonas calidirosea, Chthonomonas, Chthonomonadales, Chthonomonadetes, Armatimonadetes, Bacteria

Not on your lists

comp(11879..12544)
DNA (666bp) protein (222aa)
GMP synthase-Glutamine amidotransferase domain (EC:6.3.5.2)
GMP synthase-Glutamine amidotransferase domain {ECO:0000313|EMBL:CCW36172.1}; EC=6.3.5.2 {ECO:0000313|EMBL:CCW36172.1};; TaxID=1303518 species="Bacteria; Armatimonadetes; Chthonomonadetes; Chthonomona
GMP synthase-Glutamine amidotransferase domain n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EWL3_9BACT
13_1_40cm_2_scaffold_4184_13
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12619..15144
DNA (2526bp) protein (842aa)
Membrane alanine aminopeptidase N n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9P9W1_9DELT rbh
Membrane alanine aminopeptidase N {ECO:0000313|EMBL:EPX61165.1}; TaxID=1242864 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;"
M1 family peptidase
13_1_40cm_2_scaffold_4184_14
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15108..15536)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9DAM9_SPHYA
Spore coat protein {ECO:0000313|EMBL:KFD28741.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae
13_1_40cm_2_scaffold_4184_15
Anaeromyxobacter dehalogenans, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15613..16275
DNA (663bp) protein (221aa)
Spore coat U domain protein n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8J6U7_ANAD2
Spore coat U domain-containing protein
Spore coat U domain protein {ECO:0000313|EMBL:ACL67069.1}; Flags: Precursor;; TaxID=455488 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae
13_1_40cm_2_scaffold_4184_16
Rhodobacterales bacterium HTCC2255, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16297..16866
DNA (570bp) protein (190aa)
Spore coat U n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=Q0FFL1_9RHOB
Spore coat U {ECO:0000313|EMBL:EAU52978.1}; TaxID=367336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales.;" source="Rhodobacterales bacterium HTCC2255.;"
13_1_40cm_2_scaffold_4184_17
RBG_13_Deltaproteobacteria_43_22_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16867..17622
DNA (756bp) protein (252aa)
P pilus assembly protein chaperone PapD-like protein n=1 Tax=Nodularia spumigena CCY9414 RepID=A0ZF35_NODSP
P pilus assembly protein, chaperone PapD; K07346 fimbrial chaperone protein Tax=RBG_13_Deltaproteobacteria_43_22_curated
P pilus assembly protein chaperone PapD-like protein
13_1_40cm_2_scaffold_4184_18
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17626..19959
DNA (2334bp) protein (778aa)
Fimbrial biogenesis outer membrane usher protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7H7Q3_ANADF rbh
fimbrial biogenesis outer membrane usher protein
Fimbrial biogenesis outer membrane usher protein {ECO:0000313|EMBL:ABS24749.1}; TaxID=404589 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacterace
13_1_40cm_2_scaffold_4184_19
RBG_13_Deltaproteobacteria_65_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19961..20575)
DNA (615bp) protein (205aa)
trehalose synthase; K05343 maltose alpha-D-glucosyltransferase [EC:5.4.99.16] Tax=RBG_13_Deltaproteobacteria_65_10_curated
trehalose synthase (EC:5.4.99.16)
Putative Alpha amylase, catalytic domain subfamily n=1 Tax=Oscillatoria sp. PCC 6506 RepID=D8G2D1_9CYAN
13_1_40cm_2_scaffold_4184_20
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(20551..23175)
DNA (2625bp) protein (875aa)
trehalose synthase; K05343 maltose alpha-D-glucosyltransferase [EC:5.4.99.16] id=14428759 bin=bin3_NC10 tax=bin3_NC10 organism_group=NC10
trehalose synthase; K05343 maltose alpha-D-glucosyltransferase [EC:5.4.99.16] Tax=CSP1_5_NC10
alpha amylase, catalytic subdomain
13_1_40cm_2_scaffold_4184_21
RIFOXYB12_FULL_Gallionellales_54_9_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23339..24778
DNA (1440bp) protein (480aa)
id=4686207 bin=GWC2_Pelobacter_58_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
Uncharacterized protein Tax=RIFOXYB12_FULL_Gallionellales_54_9_curated
13_1_40cm_2_scaffold_4184_22
Myxococcus stipitatus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24775..25077
DNA (303bp) protein (101aa)
Cold-shock protein CspA n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7U9D6_MYXSD
cold-shock protein CspA
Cold-shock protein CspA {ECO:0000313|EMBL:AGC43079.1}; TaxID=1278073 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxoco
13_1_40cm_2_scaffold_4184_23
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25147..25329
DNA (183bp) protein (61aa)
SRp25 nuclear protein, isoform 3, putative n=2 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08YL3_STIAD
SRp25 nuclear protein, isoform 3, putative {ECO:0000313|EMBL:EAU65551.1}; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmat
hypothetical protein
13_1_40cm_2_scaffold_4184_24
Anaeromyxobacter dehalogenans, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25339..26586)
DNA (1248bp) protein (416aa)
Patatin n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8J989_ANAD2
patatin
Patatin {ECO:0000313|EMBL:ACL65495.1}; TaxID=455488 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyx
13_1_40cm_2_scaffold_4184_25
unknown

Not on your lists

comp(26646..27182)
DNA (537bp) protein (179aa)

This feature has no annotations

13_1_40cm_2_scaffold_4184_26
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27263..27634)
DNA (372bp) protein (124aa)
Quinolinate synthase A {ECO:0000256|HAMAP-Rule:MF_00568}; EC=2.5.1.72 {ECO:0000256|HAMAP-Rule:MF_00568};; TaxID=1144275 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacte
Quinolinate synthase A n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P5M5_9BACT
nadA; quinolinate synthetase
Displaying 27 items

View Taxonomy