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13_1_40cm_2_scaffold_1228

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_1228_1
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(1..1860)
DNA (1860bp) protein (620aa)
hypothetical protein id=14625659 bin=bin7_NC10_sister species=Schlesneria paludicola genus=Schlesneria taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=CSP1_6_Rokubacteria
hypothetical protein
13_1_40cm_2_scaffold_1228_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1919..2329)
DNA (411bp) protein (137aa)
Fimbrial protein pilin Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Fimbrial protein pilin id=4953732 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Fimbrial protein pilin
13_1_40cm_2_scaffold_1228_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2502..3908)
DNA (1407bp) protein (469aa)
pilR; transcriptional regulatory protein pilR; K02667 two-component system, NtrC family, response regulator PilR Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
pilR; regulator protein pilR; K02667 two-component system, NtrC family, response regulator PilR id=14625676 bin=bin7_NC10_sister species=Bdellovibrio bacteriovorus genus=Bdellovibrio taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
pilR; transcriptional regulatory protein pilR
13_1_40cm_2_scaffold_1228_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3905..5539)
DNA (1635bp) protein (545aa)
multi-sensor signal transduction histidine kinase; K02668 two-component system, NtrC family, sensor histidine kinase PilS [EC:2.7.13.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Multi-sensor signal transduction histidine kinase id=3773059 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Multi-sensor signal transduction histidine kinase
13_1_40cm_2_scaffold_1228_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5574..6791)
DNA (1218bp) protein (406aa)
pilC; type 4 fimbrial assembly protein pilC Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Type 4 fimbrial assembly protein pilC id=4686861 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
type II secretion system protein
13_1_40cm_2_scaffold_1228_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6801..7931)
DNA (1131bp) protein (377aa)
twitching motility protein; K02669 twitching motility protein PilT Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Twitching motility protein id=3773050 bin=GWC2_Methylomirabilis_70_16 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
twitching motility protein
13_1_40cm_2_scaffold_1228_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7950..8606)
DNA (657bp) protein (219aa)
type II secretion system protein E; K02652 type IV pilus assembly protein PilB Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Type IV-A pilus assembly ATPase PilB id=3773045 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
type II secretion system protein E
13_1_40cm_2_scaffold_1228_8
unknown

Not on your lists

8867..9193
DNA (327bp) protein (109aa)

This feature has no annotations

13_1_40cm_2_scaffold_1228_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(9643..10179)
DNA (537bp) protein (179aa)
Predicted phosphatase id=4311466 bin=GWA2_Methylomirabilis_73_35 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phosphatase Tax=GWA2_Rokubacteria_73_35_curated
Appr-1-p processing protein
13_1_40cm_2_scaffold_1228_10
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(10182..10988)
DNA (807bp) protein (269aa)
protein mazG Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Protein mazG id=4311465 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
MazG family protein
13_1_40cm_2_scaffold_1228_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11248..11469
DNA (222bp) protein (74aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4311464 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_1228_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11450..12022)
DNA (573bp) protein (191aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=4311463 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_1228_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

12277..12741
DNA (465bp) protein (155aa)
Heat shock protein Hsp20 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Heat shock protein Hsp20 id=4311462 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
HspC2 heat shock protein
13_1_40cm_2_scaffold_1228_14
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

12811..14730
DNA (1920bp) protein (640aa)
dnaK; chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
dnaK; chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70) id=14625666 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
dnaK; chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70)
13_1_40cm_2_scaffold_1228_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

14740..15636
DNA (897bp) protein (299aa)
DnaJ-class molecular chaperone with C-terminal Zn finger domain id=3544317 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Zn finger domain-containing DnaJ-class molecular chaperone; K03686 molecular chaperone DnaJ Tax=GWA2_Rokubacteria_73_35_curated
DnaJ-class molecular chaperone with C-terminal Zn finger domain
13_1_40cm_2_scaffold_1228_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15633..16028
DNA (396bp) protein (132aa)
transcriptional regulator; K13640 MerR family transcriptional regulator, heat shock protein HspR Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Transcriptional regulator id=3544313 bin=GWA2_Methylomirabilis_73_35 species=Hydrogenivirga sp. 128-5-R1-1 genus=Hydrogenivirga taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transcriptional regulator
13_1_40cm_2_scaffold_1228_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16069..18456
DNA (2388bp) protein (796aa)
ATP-dependent proteinase. Serine peptidase. MEROPS family S16 (EC:3.4.21.53) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ATP-dependent proteinase. Serine peptidase. MEROPS family S16 (EC:3.4.21.53) id=14625663 bin=bin7_NC10_sister species=Chthonomonas calidirosea genus=Chthonomonas taxon_order=Chthonomonadales taxon_class=Chthonomonadetes phylum=Armatimonadetes tax=bin7_NC10_sister organism_group=NC10
ATP-dependent proteinase. Serine peptidase. MEROPS family S16 (EC:3.4.21.53)
13_1_40cm_2_scaffold_1228_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

18523..19206
DNA (684bp) protein (228aa)
Lytic transglycosylase, catalytic Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Lytic transglycosylase, catalytic id=3544309 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Lytic transglycosylase, catalytic
13_1_40cm_2_scaffold_1228_19
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(19213..19641)
DNA (429bp) protein (143aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
hypothetical protein id=14625661 bin=bin7_NC10_sister species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_2_scaffold_1228_20
unknown

Not on your lists

19838..20074
DNA (237bp) protein (79aa)

This feature has no annotations

13_1_40cm_2_scaffold_1228_21
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

20041..20358
DNA (318bp) protein (106aa)
Type IV pilus assembly protein PilB n=1 Tax=Vibrio sp. EJY3 RepID=H2IBJ7_9VIBR
type II secretion system protein E; K02652 type IV pilus assembly protein PilB Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
type IV pilus assembly protein PilB
Displaying 21 items

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