ggKbase home page

13_1_40cm_2_scaffold_13318

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_13318_1
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(1..378)
DNA (378bp) protein (126aa)
carB; carbamoyl phosphate synthase, large subunit (EC:6.3.5.5) id=14625178 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
carB; carbamoyl phosphate synthase, large subunit (EC:6.3.5.5) Tax=CSP1_6_Rokubacteria
carB; carbamoyl phosphate synthase large subunit (EC:6.3.5.5)
13_1_40cm_2_scaffold_13318_2
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(383..649)
DNA (267bp) protein (89aa)
id=3102576 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
id=3102576 Tax=GWC2_Rokubacteria_70_16_curated
13_1_40cm_2_scaffold_13318_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(665..1786)
DNA (1122bp) protein (374aa)
carA; carbamoyl phosphate synthase small subunit; K01956 carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
carA; carbamoyl phosphate synthetase, glutamine amidotransferase small subunit (EC:6.3.5.5) id=14625175 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
carA; carbamoyl phosphate synthase small subunit
13_1_40cm_2_scaffold_13318_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1783..3069)
DNA (1287bp) protein (429aa)
pyrC; dihydroorotase (EC:3.5.2.3) Tax=GWA2_Rokubacteria_73_35_curated
pyrC; dihydroorotase (EC:3.5.2.3)
Dihydroorotase id=4530400 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_13318_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(3066..4007)
DNA (942bp) protein (314aa)
pyrB; aspartate carbamoyltransferase (catalytic subunit) (EC:2.1.3.2) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
pyrB; aspartate carbamoyltransferase (catalytic subunit) (EC:2.1.3.2) id=14625173 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
pyrB; aspartate carbamoyltransferase (catalytic subunit) (EC:2.1.3.2)
13_1_40cm_2_scaffold_13318_6
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(4009..4572)
DNA (564bp) protein (188aa)
PyrR; bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase (EC:2.4.2.9); K02825 pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] Tax=RI
pyrR; bifunctional pyrimidine operon regulatory protein/uracil phosphoribosyltransferase (EC:2.4.2.9)
Bifunctional protein PyrR id=4792710 bin=GWC2_Methylomirabilis_70_16 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_2_scaffold_13318_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4700..5329)
DNA (630bp) protein (210aa)
hypothetical protein RTW15_08591 id=4646426 bin=GWA2_Methylomirabilis_73_35 species=Ruegeria conchae genus=Ruegeria taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_2_scaffold_13318_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(5385..6635)
DNA (1251bp) protein (417aa)
Amidohydrolase id=2085174 bin=GWA2_Methylomirabilis_73_35 species=Enterococcus faecalis genus=Enterococcus taxon_order=Lactobacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
amidohydrolase family protein Tax=GWA2_Rokubacteria_73_35_curated
amidohydrolase
13_1_40cm_2_scaffold_13318_9
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(6632..7162)
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Caldicellulosiruptor obsidiansis (strain ATCC BAA-2073 / strain OB47) RepID=D9THI2_CALOO
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein
13_1_40cm_2_scaffold_13318_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(7228..7752)
DNA (525bp) protein (175aa)
Sulfate/thiosulfate import ATP-binding protein CysA 2 id=4975511 bin=GWA2_Methylomirabilis_73_35 species=Streptomyces sp. Mg1 genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter ATP-binding protein; K02052 putative spermidine/putrescine transport system ATP-binding protein Tax=GWA2_Rokubacteria_73_35_curated
spermidine/putrescine ABC transporter ATP-binding subunit
13_1_40cm_2_scaffold_13318_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(7757..8227)
DNA (471bp) protein (157aa)
ABC transporter ATP-binding protein; K02052 putative spermidine/putrescine transport system ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Sulfate/thiosulfate import ATP-binding protein CysA 2 id=4975511 bin=GWA2_Methylomirabilis_73_35 species=Streptomyces sp. Mg1 genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
spermidine/putrescine ABC transporter ATP-binding protein
13_1_40cm_2_scaffold_13318_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(8224..9009)
DNA (786bp) protein (262aa)
Binding--dependent transport system inner membrane component family protein id=4975510 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
binding-protein-dependent transport system inner membrane protein; K02053 putative spermidine/putrescine transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
binding-protein-dependent transport system inner membrane protein
13_1_40cm_2_scaffold_13318_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(9006..9800)
DNA (795bp) protein (265aa)
ABC-type spermidine/putrescine transport system, permease component I id=4975509 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium sp. YR681 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
binding-protein-dependent transport system inner membrane protein; K02054 putative spermidine/putrescine transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
binding-protein-dependent transport systems inner membrane component
13_1_40cm_2_scaffold_13318_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(9797..10828)
DNA (1032bp) protein (344aa)
Extracellular solute-binding protein family 1 id=4975503 bin=GWA2_Methylomirabilis_73_35 species=Xanthobacter autotrophicus genus=Xanthobacter taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
extracellular solute-binding protein; K02055 putative spermidine/putrescine transport system substrate-binding protein Tax=GWA2_Rokubacteria_73_35_curated
extracellular solute-binding protein
13_1_40cm_2_scaffold_13318_15
Mycobacterium mageritense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10866..11450)
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) RepID=A0QWJ9_MYCS2
Glycine cleavage system protein T (Aminomethyltransferase) {ECO:0000313|EMBL:CDO26302.1}; TaxID=53462 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="M
Urea carboxylase-related aminomethyltransferase
13_1_40cm_2_scaffold_13318_16
Jonquetella anthropi, Jonquetella, Synergistales, Synergistia, Synergistetes, Bacteria

Not on your lists

comp(11450..12166)
DNA (717bp) protein (239aa)
Hydantoin racemase n=1 Tax=Jonquetella anthropi DSM 22815 RepID=H0UIF3_9BACT
Hydantoin racemase {ECO:0000313|EMBL:EHM12661.1}; TaxID=885272 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Jonquetella.;" source="Jonquetella anthropi DSM 22815.;"
asp/Glu/Hydantoin racemase family protein
Displaying 16 items

View Taxonomy