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13_1_40cm_2_scaffold_1450

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_1450_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

68..400
DNA (333bp) protein (111aa)
ferredoxin Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Ferredoxin id=3388822 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
ferredoxin
13_1_40cm_2_scaffold_1450_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


407..2092
DNA (1686bp) protein (562aa)
proS; prolyl-tRNA synthetase (ProRS) (EC:6.1.1.15) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
proS; prolyl-tRNA synthetase (ProRS) (EC:6.1.1.15) id=14625411 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
proS; prolyl-tRNA synthetase (ProRS) (EC:6.1.1.15)
13_1_40cm_2_scaffold_1450_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2246..2587
DNA (342bp) protein (114aa)
hypothetical protein; K09748 ribosome maturation factor RimP Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Ribosome maturation factor RimP id=1723420 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_2_scaffold_1450_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2725..3855
DNA (1131bp) protein (377aa)
NusA antitermination factor; K02600 N utilization substance protein A Tax=GWA2_Rokubacteria_73_35_curated
NusA antitermination factor id=1723421 bin=GWA2_Methylomirabilis_73_35 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NusA antitermination factor
13_1_40cm_2_scaffold_1450_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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4114..6228
DNA (2115bp) protein (705aa)
Translation initiation factor IF-2 id=1723423 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
infB; translation initiation factor IF-2 Tax=GWA2_Rokubacteria_73_35_curated
translation initiation factor IF-2
13_1_40cm_2_scaffold_1450_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6216..6587
DNA (372bp) protein (124aa)
infB; translation initiation factor IF-2; K02519 translation initiation factor IF-2 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Translation initiation factor IF-2 id=1723423 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
translation initiation factor 2 (bIF-2)
13_1_40cm_2_scaffold_1450_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

6609..6899
DNA (291bp) protein (97aa)
Uncharacterized protein id=1723424 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_2_scaffold_1450_8
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

6899..7246
DNA (348bp) protein (116aa)
rbfA; putative ribosome-binding factor A; K02834 ribosome-binding factor A Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Ribosome-binding factor A id=1723425 bin=GWA2_Methylomirabilis_73_35 species=Thermobacillus composti genus=Thermobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rbfA; ribosome-binding factor A
13_1_40cm_2_scaffold_1450_9
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

7290..8189
DNA (900bp) protein (300aa)
exopolyphosphatase-related proteins; K06881 phosphoesterase RecJ domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Exopolyphosphatase-like enzyme id=1723426 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
exopolyphosphatase-related proteins
13_1_40cm_2_scaffold_1450_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

8186..9103
DNA (918bp) protein (306aa)
tRNA pseudouridine synthase b; K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25] Tax=GWA2_Rokubacteria_73_35_curated
tRNA pseudouridine synthase B id=1723427 bin=GWA2_Methylomirabilis_73_35 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tRNA pseudouridine synthase B
13_1_40cm_2_scaffold_1450_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

9066..9992
DNA (927bp) protein (309aa)
riboflavin biosynthesis protein RibF; K11753 riboflavin kinase / FMN adenylyltransferase [EC:2.7.1.26 2.7.7.2] Tax=GWA2_Rokubacteria_73_35_curated
Riboflavin biosynthesis protein RibF id=1723429 bin=GWA2_Methylomirabilis_73_35 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
riboflavin biosynthesis protein RibF
13_1_40cm_2_scaffold_1450_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


10109..10378
DNA (270bp) protein (90aa)
30S ribosomal protein S15 id=1723473 bin=GWA2_Methylomirabilis_73_35 species=Clostridium ultunense genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpsO; 30S ribosomal protein S15; K02956 small subunit ribosomal protein S15 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
rpsO; 30S ribosomal protein S15
13_1_40cm_2_scaffold_1450_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10503..12647
DNA (2145bp) protein (715aa)
pnp; Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) (EC:2.7.7.8) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
pnp; Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) (EC:2.7.7.8) id=14625422 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
pnp; Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase) (EC:2.7.7.8)
13_1_40cm_2_scaffold_1450_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

12640..13905
DNA (1266bp) protein (422aa)
peptidase M16 domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ymxG; hypothetical protein id=14625423 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
ymxG; hypothetical protein
13_1_40cm_2_scaffold_1450_15
Intrasporangium chromatireducens, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13814..14758)
DNA (945bp) protein (315aa)
Cyclase family protein n=1 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SGD2_THEM7
Cyclase {ECO:0000313|EMBL:EWT06681.1}; TaxID=584657 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium chromatireducens Q5-1.;"
cyclase family protein
13_1_40cm_2_scaffold_1450_16
Candidatus Accumulibacter sp. SK-02, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14755..15417)
DNA (663bp) protein (221aa)
GntR family transcriptional regulator n=1 Tax=Thermus islandicus RepID=UPI0003B520FA
Putative HTH-type transcriptional regulator YdfH {ECO:0000313|EMBL:KFB78395.1}; TaxID=1453999 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Acc
GntR family transcriptional regulator
13_1_40cm_2_scaffold_1450_17
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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15597..16391
DNA (795bp) protein (265aa)
3-oxoacyl-(Acyl-carrier protein) reductase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QES4_9BRAD
Short-chain dehydrogenase {ECO:0000313|EMBL:KJC48752.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium
short-chain dehydrogenase/reductase SDR
13_1_40cm_2_scaffold_1450_18
RBG_16_Deltaproteobacteria_48_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16465..17688
DNA (1224bp) protein (408aa)
Extracellular ligand-binding receptor n=1 Tax=Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14) RepID=E1QIA8_DESB2
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein Tax=RBG_16_Deltaproteobacteria_48_10_curated
extracellular ligand-binding receptor
13_1_40cm_2_scaffold_1450_19
unknown

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comp(17874..18020)
DNA (147bp) protein (49aa)

This feature has no annotations

13_1_40cm_2_scaffold_1450_20
RBG_16_Actinobacteria_67_10_curated, Acidimicrobiia, Actinobacteria, Bacteria

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18296..18613
DNA (318bp) protein (106aa)
Inner-membrane translocator n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LK71_SYNFM
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein Tax=RBG_16_Actinobacteria_67_10_curated
inner-membrane translocator
Displaying 20 items

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