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13_1_40cm_2_scaffold_2471

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_2471_1
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

comp(2..661)
DNA (660bp) protein (220aa)
histidine kinase Tax=RBG_16_NC10_65_8_curated
Putative Hybrid sensor histidine kinase id=4475560 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative two-component histidine kinase
13_1_40cm_2_scaffold_2471_2
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

1081..2838
DNA (1758bp) protein (586aa)
ABC transporter related n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AZL5_RUBXD
ABC transporter-like protein
ABC transporter related {ECO:0000313|EMBL:ABG03163.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrob
13_1_40cm_2_scaffold_2471_3
BJP_IG2069_Desfulfarculales_53_13, Desulfarculales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2945..3706
DNA (762bp) protein (254aa)
Putative uncharacterized protein n=1 Tax=Thermus sp. CCB_US3_UF1 RepID=G8NAD0_9DEIN
hypothetical protein
Tax=BJP_IG2069_Desfulfarculales_53_13
13_1_40cm_2_scaffold_2471_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3732..4349)
DNA (618bp) protein (206aa)
Thiol-disulfide isomerase and thioredoxins Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Thiol-disulfide isomerase and thioredoxins id=3830905 bin=GWF2_Methylomirabilis_70_14 species=Magnetospirillum sp. SO-1 genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Redoxin domain-containing protein
13_1_40cm_2_scaffold_2471_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

4413..5417
DNA (1005bp) protein (335aa)
Putative lipoprotein id=1709658 bin=GWA2_Methylomirabilis_73_35 species=Teredinibacter turnerae genus=Teredinibacter taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
lipoprotein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_2_scaffold_2471_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5463..8408
DNA (2946bp) protein (982aa)
glpC; D-lactate dehydrogenase (cytochrome) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glr3436 protein id=3830908 bin=GWF2_Methylomirabilis_70_14 species=Gloeobacter violaceus genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glpC; D-lactate dehydrogenase (cytochrome)
13_1_40cm_2_scaffold_2471_7
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(8409..9269)
DNA (861bp) protein (287aa)
metallo-beta-lactamase family protein id=14626395 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10 rbh
metallo-beta-lactamase family protein Tax=CSP1_6_Rokubacteria
metallo-beta-lactamase family protein
13_1_40cm_2_scaffold_2471_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9329..10063
DNA (735bp) protein (245aa)
hypothetical protein; K07090 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4766447 bin=GWC2_Methylomirabilis_70_16 species=Thioalkalivibrio nitratireducens genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
glutamine amidotransferase
13_1_40cm_2_scaffold_2471_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10088..10579)
DNA (492bp) protein (164aa)
id=4885132 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=14625322 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_2_scaffold_2471_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10715..10960
DNA (246bp) protein (82aa)
dienelactone hydrolase; K01061 carboxymethylenebutenolidase [EC:3.1.1.45] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Dienelactone hydrolase-like enzyme n=1 Tax=Microcoleus sp. PCC 7113 RepID=K9WI36_9CYAN
dienelactone hydrolase-like enzyme
13_1_40cm_2_scaffold_2471_11
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10932..11558
DNA (627bp) protein (209aa)
carboxymethylenebutenolidase (EC:3.1.1.45); K01061 carboxymethylenebutenolidase [EC:3.1.1.45] Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
carboxymethylenebutenolidase (EC:3.1.1.45)
Putative carboxymethylenebutenolidase (Dienelactone hydrolase) (Tat pathway signal) n=1 Tax=Methylobacterium extorquens (strain DSM 5838 / DM4) RepID=C7C8D3_METED
13_1_40cm_2_scaffold_2471_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11593..12477)
DNA (885bp) protein (295aa)
response regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
response regulator receiver modulated metal dependent phosphohydrolase id=14626650 bin=bin7_NC10_sister species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase
13_1_40cm_2_scaffold_2471_13
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(12648..13598)
DNA (951bp) protein (317aa)
diguanylate cyclase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Diguanylate cyclase id=2338959 bin=GWA2_Methylomirabilis_73_35 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
diguanylate cyclase
13_1_40cm_2_scaffold_2471_14
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

13654..13893
DNA (240bp) protein (80aa)
SirA family protein id=14626647 bin=bin7_NC10_sister species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
SirA family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
SirA family protein
13_1_40cm_2_scaffold_2471_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

13853..15055
DNA (1203bp) protein (401aa)
class V aminotransferase (EC:2.8.1.7); K04487 cysteine desulfurase [EC:2.8.1.7] Tax=GWA2_Rokubacteria_73_35_curated
class V aminotransferase (EC:2.8.1.7)
Aminotransferase class V id=2338873 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_2471_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15087..15779
DNA (693bp) protein (231aa)
gph; phosphoglycolate phosphatase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Hydrolase, haloacid dehalogenase-like family id=2338871 bin=GWA2_Methylomirabilis_73_35 species=Chlorobium chlorochromatii genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_2_scaffold_2471_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

15776..16225
DNA (450bp) protein (150aa)
hypothetical protein id=2338870 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_2_scaffold_2471_18
unknown

Not on your lists

comp(16252..16470)
DNA (219bp) protein (73aa)

This feature has no annotations

13_1_40cm_2_scaffold_2471_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16667..17746)
DNA (1080bp) protein (360aa)
malate/L-lactate dehydrogenase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Malate/L-lactate dehydrogenase id=2338865 bin=GWA2_Methylomirabilis_73_35 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
malate/L-lactate dehydrogenase
13_1_40cm_2_scaffold_2471_20
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(17772..17924)
DNA (153bp) protein (51aa)
F420-dependent NADPH reductase; K06988 Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
NADPH-dependent F420 reductase id=2614759 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Sphingobium taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_2_scaffold_2471_21
unknown

Not on your lists

17957..18292
DNA (336bp) protein (112aa)

This feature has no annotations

13_1_40cm_2_scaffold_2471_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18436..19191)
DNA (756bp) protein (252aa)
coenzyme F420-0 gamma-glutamyl ligase; K12234 coenzyme F420-0:L-glutamate ligase / coenzyme F420-1:gamma-L-glutamate ligase [EC:6.3.2.31 6.3.2.34] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
coenzyme F420-0 gamma-glutamyl ligase; K12234 coenzyme F420-0:L-glutamate ligase / coenzyme F420-1:gamma-L-glutamate ligase [EC:6.3.2.31 6.3.2.34] id=14628085 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
coenzyme F420-0 gamma-glutamyl ligase (EC:6.3.2.-)
13_1_40cm_2_scaffold_2471_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(19188..19850)
DNA (663bp) protein (221aa)
2-phospho-L-lactate guanylyltransferase CofC; K14941 2-phospho-L-lactate guanylyltransferase [EC:2.7.7.68] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
2-phospho-L-lactate guanylyltransferase id=2615049 bin=GWC2_Methylomirabilis_70_24 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
2-phospho-L-lactate guanylyltransferase CofC
13_1_40cm_2_scaffold_2471_24
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(19847..20794)
DNA (948bp) protein (316aa)
LPPG:FO 2-phospho-L-lactate transferase; K11212 LPPG:FO 2-phospho-L-lactate transferase [EC:2.7.8.28] Tax=GWA2_Rokubacteria_73_35_curated
2-phospho-L-lactate transferase id=2615052 bin=GWC2_Methylomirabilis_70_24 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
LPPG:FO 2-phospho-L-lactate transferase
13_1_40cm_2_scaffold_2471_25
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(20802..21221)
DNA (420bp) protein (140aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein id=2338861 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Displaying 25 items

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