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13_1_40cm_2_scaffold_3379

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_3379_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1..1485
DNA (1485bp) protein (495aa)
EmrB/QacA family drug resistance transporter; K03446 MFS transporter, DHA2 family, multidrug resistance protein B Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Drug resistance transporter, EmrB/QacA subfamily id=4748857 bin=GWC2_Methylomirabilis_70_16 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
EmrB/QacA family drug resistance transporter
13_1_40cm_2_scaffold_3379_2
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1504..2253
DNA (750bp) protein (250aa)
oxidoreductase Tax=RBG_13_Deltaproteobacteria_53_10_curated
Short-chain dehydrogenase/reductase SDR id=1761203 bin=GWD2_Deltaproteobacteria_55_8 species=Pseudomonas stutzeri genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
oxidoreductase
13_1_40cm_2_scaffold_3379_3
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2281..3279
DNA (999bp) protein (333aa)
Flavin-dependent oxidoreductase, F420-dependent methylene-tetrahydromethanopterin reductase n=1 Tax=Saccharomonospora marina XMU15 RepID=H5X7E9_9PSEU
Uncharacterized protein {ECO:0000313|EMBL:ETX06447.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
putative N5 C N10-methylene-tetrahydromethanopterin reductase
13_1_40cm_2_scaffold_3379_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3281..3595)
DNA (315bp) protein (105aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Uncharacterized protein id=4161394 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_2_scaffold_3379_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3774..4121)
DNA (348bp) protein (116aa)
arylformamidase (EC:3.5.1.9) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
arylformamidase (EC:3.5.1.9)
hypothetical protein n=1 Tax=Sciscionella marina RepID=UPI0003769728
13_1_40cm_2_scaffold_3379_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4072..4629)
DNA (558bp) protein (186aa)
arylformamidase (EC:3.5.1.9) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RKR6_9PROT
esterase
13_1_40cm_2_scaffold_3379_7
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(4639..5625)
DNA (987bp) protein (329aa)
Putative uncharacterized protein id=4177889 bin=GWC2_Methylomirabilis_70_16 species=Bradyrhizobium sp. genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
phospholipase/Carboxylesterase family protein
13_1_40cm_2_scaffold_3379_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(5622..5900)
DNA (279bp) protein (93aa)
peroxiredoxin Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Thiol-specific antioxidant protein id=4327972 bin=GWA2_Methylomirabilis_73_35 species=Cytophaga hutchinsonii genus=Cytophaga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
alkyl hydroperoxide reductase
13_1_40cm_2_scaffold_3379_9
GWF2_Methylomirabilis_70_14, GWF2_Methylomirabilis_70_14, GWF2_Methylomirabilis_70_14, GWF2_Methylomirabilis_70_14, Methylomirabilis, Bacteria

Not on your lists

comp(5958..6089)
DNA (132bp) protein (44aa)
Thiol-specific antioxidant protein, putative id=3831004 bin=GWF2_Methylomirabilis_70_14 species=Deinococcus radiodurans genus=Deinococcus taxon_order=Deinococcales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Thiol-specific antioxidant protein, putative id=3831004 bin=GWF2_Methylomirabilis_70_14 species=Deinococcus radiodurans genus=Deinococcus taxon_order=Deinococcales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_3379_10
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6089..6781)
DNA (693bp) protein (231aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00035D319E
putative branched-chain amino acid ABC transporter ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
branched-chain amino acid ABC transporter ATP-binding protein
13_1_40cm_2_scaffold_3379_11
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6783..7538)
DNA (756bp) protein (252aa)
Branched-chain amino acid ABC transporter,ATP-binding component n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AIU8_AZOBR
branched-chain amino acid ABC transporter substrate-binding protein
Branched-chain amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:AIB10855.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae
13_1_40cm_2_scaffold_3379_12
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(7535..8491)
DNA (957bp) protein (319aa)
Putative branched-chain amino acid ABC transporter, permease protein n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SM61_9BRAD
putative branched-chain amino acid ABC transporter, permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
branched-chain amino acid ABC transporter permease
13_1_40cm_2_scaffold_3379_13
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8493..9362)
DNA (870bp) protein (290aa)
Branched-chain amino acid transport system permease n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HHP7_9BRAD
ABC transporter permease; K01997 branched-chain amino acid transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
putative branched-chain amino acid ABC transporter permease protein
13_1_40cm_2_scaffold_3379_14
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9413..10564)
DNA (1152bp) protein (384aa)
methionine synthase vitamin-B12 independent protein; K00549 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
hypothetical protein n=1 Tax=Actinomycetospora chiangmaiensis RepID=UPI000360F8D2 rbh
Methionine synthase vitamin-B12 independent protein
13_1_40cm_2_scaffold_3379_15
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10587..11756)
DNA (1170bp) protein (390aa)
Extracellular ligand-binding receptor n=1 Tax=Oceanibaculum indicum P24 RepID=K2JLU6_9PROT rbh
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
ABC transporter substrate-binding protein
13_1_40cm_2_scaffold_3379_16
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11808..12746
DNA (939bp) protein (313aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI000363CB9B
4Fe-4S ferredoxin Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
13_1_40cm_2_scaffold_3379_17
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13160..13675
DNA (516bp) protein (172aa)
Putative 4Fe-4S ferredoxin iron-sulfur binding domain protein n=1 Tax=uncultured bacterium 1116 RepID=B8R904_9BACT
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
13_1_40cm_2_scaffold_3379_18

Not on your lists

13677..14963
DNA (1287bp) protein (429aa)
phenylacetate--CoA ligase (EC:6.2.1.30)
Putative phenylacetate-CoA ligase n=1 Tax=uncultured bacterium 1116 RepID=B8R903_9BACT
Putative phenylacetate-CoA ligase {ECO:0000313|EMBL:ACF98159.1}; TaxID=548899 species="Bacteria; environmental samples.;" source="uncultured bacterium 1116.;"
13_1_40cm_2_scaffold_3379_19
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(15113..16216)
DNA (1104bp) protein (368aa)
alcohol dehydrogenase class III; K00121 S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
alcohol dehydrogenase class III; K00121 S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] id=14627216 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
alcohol dehydrogenase class III
13_1_40cm_2_scaffold_3379_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16358..18613
DNA (2256bp) protein (752aa)
oxidoreductase (EC:1.-.-.-); K09461 anthraniloyl-CoA monooxygenase [EC:1.14.13.40] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Oxidoreductase n=1 Tax=Magnetospirillum sp. SO-1 RepID=M3AAA3_9PROT
salicylyl-CoA 5-hydroxylase
13_1_40cm_2_scaffold_3379_21
Flexibacter litoralis, Flexibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

18681..19601
DNA (921bp) protein (307aa)
Methyltransferase, FkbM family n=1 Tax=Flexibacter litoralis (strain ATCC 23117 / DSM 6794 / NBRC 15988 / NCIMB 1366 / Sio-4) RepID=I4AMG6_FLELS
FkbM family methyltransferase
Methyltransferase, FkbM family {ECO:0000313|EMBL:AFM05151.1}; TaxID=880071 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Flexibacter.;" source="Flexibacter litoralis (stra
13_1_40cm_2_scaffold_3379_22
Pseudogulbenkiania sp. NH8B, Pseudogulbenkiania, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(19554..20270)
DNA (717bp) protein (239aa)
4'-phosphopantetheinyl transferase n=1 Tax=Pseudogulbenkiania sp. (strain NH8B) RepID=G2J5H4_PSEUL
4'-phosphopantetheinyl transferase
4'-phosphopantetheinyl transferase {ECO:0000313|EMBL:BAK77319.1}; TaxID=748280 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Pseudogulbenkiania.;" source="Ps
13_1_40cm_2_scaffold_3379_23
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20267..21088)
DNA (822bp) protein (274aa)
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II n=1 Tax=Microvirga sp. WSM3557 RepID=I4YKH8_9RHIZ
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II {ECO:0000313|EMBL:EIM24470.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;"
hypothetical protein
Displaying 23 items

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