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13_1_40cm_2_scaffold_3858

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Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_3858_1
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(4..1497)
DNA (1494bp) protein (498aa)
benzoate-CoA ligase family Tax=GWA2_Rokubacteria_70_23_curated
Benzoate-CoA ligase family id=4137710 bin=GWF2_Methylomirabilis_70_14 species=Desulfotomaculum gibsoniae genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
benzoate-CoA ligase family
13_1_40cm_2_scaffold_3858_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1494..2270)
DNA (777bp) protein (259aa)
NUDIX hydrolase id=4464477 bin=GWA2_Methylomirabilis_73_35 species=Frankia sp. EUN1f genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NUDIX hydrolase Tax=GWA2_Rokubacteria_73_35_curated
metallo-beta-lactamase family protein
13_1_40cm_2_scaffold_3858_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2311..2754)
DNA (444bp) protein (148aa)
Putative uncharacterized protein id=4900341 bin=GWA2_Methylomirabilis_73_35 species=Patulibacter medicamentivorans genus=Patulibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
pyridoxamine 5'-phosphate oxidase-related FMN-binding protein Tax=GWA2_Rokubacteria_73_35_curated
pyridoxamine 5'-phosphate oxidase
13_1_40cm_2_scaffold_3858_4
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(2781..3062)
DNA (282bp) protein (94aa)
putative acyl-CoA dehydrogenase (EC:1.3.99.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
putative acyl-CoA dehydrogenase (EC:1.3.99.-)
Butyryl-CoA dehydrogenase id=4464474 bin=GWA2_Methylomirabilis_73_35 species=Frankia sp. CN3 genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_3858_5
unknown

Not on your lists

comp(3029..3715)
DNA (687bp) protein (229aa)

This feature has no annotations

13_1_40cm_2_scaffold_3858_6
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(3834..5030)
DNA (1197bp) protein (399aa)
Acyl-CoA dehydrogenase domain protein id=4696833 bin=GWC2_Methylomirabilis_70_16 species=Patulibacter medicamentivorans genus=Patulibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
acyl-CoA dehydrogenase Tax=GWC2_Rokubacteria_70_16_curated
acyl-CoA dehydrogenase domain-containing protein
13_1_40cm_2_scaffold_3858_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5124..6365
DNA (1242bp) protein (414aa)
hydantoinase/carbamoylase amidase (EC:3.5.1.87); K06016 N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.87] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
amidase, hydantoinase/carbamoylase family (EC:3.5.1.87)
Amidase, hydantoinase/carbamoylase family id=4464472 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_3858_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

6426..7427
DNA (1002bp) protein (334aa)
cytochrome c oxidase subunit II (EC:1.9.3.1); K02275 cytochrome c oxidase subunit II [EC:1.9.3.1] Tax=GWA2_Rokubacteria_73_35_curated
Cytochrome c oxidase subunit 2 id=4464471 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cytochrome c oxidase subunit II
13_1_40cm_2_scaffold_3858_9
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

7444..9810
DNA (2367bp) protein (789aa)
ctaD; cytochrome c oxidase subunit I (EC:1.9.3.1); K02274 cytochrome c oxidase subunit I [EC:1.9.3.1] Tax=GWA2_Rokubacteria_70_23_curated
ctaD; cytochrome c oxidase subunit I (EC:1.9.3.1)
Cytochrome c oxidase subunit I id=4393250 bin=GWF2_Methylomirabilis_70_14 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_3858_10
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

9810..10109
DNA (300bp) protein (100aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative uncharacterized protein id=4464469 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cytochrome C oxidase subunit IV
13_1_40cm_2_scaffold_3858_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

10106..10843
DNA (738bp) protein (246aa)
ctaG; putative CtaG protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative CtaG protein id=4464468 bin=GWA2_Methylomirabilis_73_35 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Cytochrome c oxidase caa3-type, assembly factor CtaG-related protein
13_1_40cm_2_scaffold_3858_12
unknown

Not on your lists

10958..11161
DNA (204bp) protein (68aa)

This feature has no annotations

13_1_40cm_2_scaffold_3858_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

11240..12550
DNA (1311bp) protein (437aa)
nucleotide sugar dehydrogenase (EC:1.1.1.22) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
nucleotide sugar dehydrogenase (EC:1.1.1.22)
Nucleotide sugar dehydrogenase id=3102365 bin=GWC2_Methylomirabilis_70_16 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_2_scaffold_3858_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

12555..13490
DNA (936bp) protein (312aa)
NAD-dependent epimerase/dehydratase; K01710 dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
UDP-glucuronate decarboxylase (EC:4.1.1.35)
NAD-dependent epimerase/dehydratase id=2287859 bin=GWA2_Methylomirabilis_73_35 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_3858_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

13487..14419
DNA (933bp) protein (311aa)
NAD-dependent epimerase/dehydratase; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2] Tax=GWA2_Rokubacteria_73_35_curated
galE; UDP-glucose 4-epimerase (EC:5.1.3.2)
NAD-dependent epimerase/dehydratase id=2287861 bin=GWA2_Methylomirabilis_73_35 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_3858_16
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

14424..14588
DNA (165bp) protein (55aa)
hypothetical protein; K09791 hypothetical protein id=14625157 bin=bin7_NC10_sister species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
hypothetical protein; K09791 hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
hypothetical protein
13_1_40cm_2_scaffold_3858_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14585..15667
DNA (1083bp) protein (361aa)
nucleotidyl transferase; K00966 mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Nucleotidyl transferase id=3102370 bin=GWC2_Methylomirabilis_70_16 species=Conexibacter woesei genus=Conexibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
nucleotidyl transferase
13_1_40cm_2_scaffold_3858_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15707..16576
DNA (870bp) protein (290aa)
GTP-binding protein LepA; K03596 GTP-binding protein LepA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Elongation factor 4 id=3972895 bin=GWC2_Methylomirabilis_70_24 species=Alicyclobacillus acidocaldarius genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
GTP-binding protein LepA
13_1_40cm_2_scaffold_3858_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16655..17209
DNA (555bp) protein (185aa)
GTP-binding protein LepA; K03596 GTP-binding protein LepA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Elongation factor 4 id=3972895 bin=GWC2_Methylomirabilis_70_24 species=Alicyclobacillus acidocaldarius genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
GTP-binding protein LepA
13_1_40cm_2_scaffold_3858_20
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

17206..17385
DNA (180bp) protein (60aa)
lepA; GTP-binding protein LepA; K03596 GTP-binding protein LepA Tax=GWC2_Rokubacteria_70_16_curated
Elongation factor 4 id=4648602 bin=GWF2_Methylomirabilis_70_14 species=Alicyclobacillus acidocaldarius genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
GTP-binding protein LepA
13_1_40cm_2_scaffold_3858_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17385..18107
DNA (723bp) protein (241aa)
lepB; signal peptidase I; K03100 signal peptidase I [EC:3.4.21.89] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
signal peptidase I (EC:3.4.21.89)
Signal peptidase I id=3102374 bin=GWC2_Methylomirabilis_70_16 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_2_scaffold_3858_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

18419..19453
DNA (1035bp) protein (345aa)
putative oxygen-independent coproporphyrinogen III oxidase (EC:1.3.99.22); K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Coproporphyrinogen III oxidase id=3102376 bin=GWC2_Methylomirabilis_70_16 species=Corynebacterium genitalium genus=Corynebacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
coproporphyrinogen III oxidase
13_1_40cm_2_scaffold_3858_23
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

19515..20531
DNA (1017bp) protein (339aa)
Heat-inducible transcription repressor HrcA id=2287870 bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
heat-inducible transcriptional repressor; K03705 heat-inducible transcriptional repressor Tax=GWA2_Rokubacteria_73_35_curated
hrcA; heat-inducible transcription repressor HrcA
13_1_40cm_2_scaffold_3858_24
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

20528..21046
DNA (519bp) protein (173aa)
Protein GrpE id=2287871 bin=GWA2_Methylomirabilis_73_35 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
GrpE protein HSP-70 cofactor; K03687 molecular chaperone GrpE Tax=GWA2_Rokubacteria_73_35_curated
molecular chaperone GrpE
13_1_40cm_2_scaffold_3858_25
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

21049..22143
DNA (1095bp) protein (365aa)
dnaJ; chaperone protein dnaJ, heat shock protein (Hsp40), co-chaperone with dnaK Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Chaperone protein DnaJ id=2287872 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dnaJ; chaperone protein dnaJ, heat shock protein (Hsp40), co-chaperone with dnaK
13_1_40cm_2_scaffold_3858_26
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

22143..23024
DNA (882bp) protein (294aa)
prmA; 50S ribosomal protein L11 methyltransferase; K02687 ribosomal protein L11 methyltransferase [EC:2.1.1.-] Tax=GWA2_Rokubacteria_73_35_curated
Ribosomal protein L11 methyltransferase id=2287873 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum acetoxidans genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
prmA; 50S ribosomal protein L11 methyltransferase
13_1_40cm_2_scaffold_3858_27
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

23102..23779
DNA (678bp) protein (226aa)
16S ribosomal RNA methyltransferase RsmE; K09761 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Ribosomal RNA small subunit methyltransferase E id=2287874 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_2_scaffold_3858_28
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

23772..24197
DNA (426bp) protein (142aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein id=14625167 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_2_scaffold_3858_29
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

24319..25251
DNA (933bp) protein (311aa)
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; K02535 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] Tax=GWA2_Rokubacteria_73_35_curated
lpxC; UDP-3-O-acyl N-acetylglucosamine deacetylase (EC:3.5.1.-)
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase id=2287875 bin=GWA2_Methylomirabilis_73_35 species=uncultured Acidobacteria bacterium HF0770_27F21 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_3858_30
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

25340..25900
DNA (561bp) protein (187aa)
Putative uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=2287876 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Displaying items 1-30 of 45 in total

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