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13_1_40cm_2_scaffold_4005

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_4005_1
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(3..1472)
DNA (1470bp) protein (490aa)
solute binding protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
Putative uncharacterized protein id=14625570 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacillariophyta tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_2_scaffold_4005_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1593..2960)
DNA (1368bp) protein (456aa)
Extracellular ligand-binding receptor id=5022303 bin=GWA2_Methylomirabilis_73_35 species=Haloferax denitrificans genus=Haloferax taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
branched chain amino acid ABC transporter substrate-binding protein Tax=GWA2_Rokubacteria_73_35_curated
branched chain amino acid ABC transporter substrate-binding protein
13_1_40cm_2_scaffold_4005_3
R_NC10_66_22, NC10, Bacteria

Not on your lists

3112..3825
DNA (714bp) protein (238aa)
id=14625572 Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
id=14625572 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_2_scaffold_4005_4
unknown

Not on your lists

comp(3779..3898)
DNA (120bp) protein (40aa)

This feature has no annotations

13_1_40cm_2_scaffold_4005_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

3932..4654
DNA (723bp) protein (241aa)
Polysaccharide deacetylase id=3955121 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
polysaccharide deacetylase Tax=GWA2_Rokubacteria_73_35_curated
polysaccharide deacetylase
13_1_40cm_2_scaffold_4005_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4655..5026)
DNA (372bp) protein (124aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Membrane protein, putative id=3955119 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
membrane protein
13_1_40cm_2_scaffold_4005_7
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(5026..5451)
DNA (426bp) protein (142aa)
id=3609760 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
13_1_40cm_2_scaffold_4005_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(5448..5864)
DNA (417bp) protein (139aa)
id=3870377 Tax=GWA2_Rokubacteria_73_35_curated
id=3870377 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_4005_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(5861..7690)
DNA (1830bp) protein (610aa)
Putative ABC transporter permease protein id=3955116 bin=GWA2_Methylomirabilis_73_35 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter permease; K02004 putative ABC transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
lipoprotein releasing system, ATP-binding protein
13_1_40cm_2_scaffold_4005_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(7961..9232)
DNA (1272bp) protein (424aa)
monooxygenase FAD-binding protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Flavin-dependent dehydrogenase id=2980067 bin=GWC2_Methylomirabilis_70_16 species=Xanthomonas gardneri genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_2_scaffold_4005_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9229..11283)
DNA (2055bp) protein (685aa)
cell wall biogenesis glycosyltransferase (EC:2.4.-.-)
glycosyl transferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycosyltransferase involved in cell wall biogenesis id=3870373 bin=GWF2_Methylomirabilis_70_14 species=Granulibacter bethesdensis genus=Granulibacter taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_4005_12
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(11280..12458)
DNA (1179bp) protein (393aa)
Beta-ketoacyl synthase id=3713926 bin=GWC2_Methylomirabilis_70_16 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
beta-ketoacyl synthase Tax=GWC2_Rokubacteria_70_16_curated
3-oxoacyl-(acyl-carrier-protein) synthase 2
13_1_40cm_2_scaffold_4005_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(12455..12730)
DNA (276bp) protein (92aa)
hypothetical protein; K02078 acyl carrier protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein; K02078 acyl carrier protein id=14627962 bin=bin7_NC10_sister species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_2_scaffold_4005_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12738..13529)
DNA (792bp) protein (264aa)
beta-ketoacyl synthase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Probable 3-oxoacyl-[acyl-carrier-protein] synthase II id=3713929 bin=GWC2_Methylomirabilis_70_16 species=Streptomyces violaceusniger genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative 3-oxoacyl-ACP synthase I
13_1_40cm_2_scaffold_4005_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13526..14695)
DNA (1170bp) protein (390aa)
3-oxoacyl-ACP synthase (EC:2.3.1.41)
3-oxoacyl-ACP synthase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
3-oxoacyl-[acyl-carrier-protein] synthase 2 id=3713931 bin=GWC2_Methylomirabilis_70_16 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
13_1_40cm_2_scaffold_4005_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14685..15614)
DNA (930bp) protein (310aa)
lipid A biosynthesis acyltransferase; K02517 lipid A biosynthesis lauroyl acyltransferase [EC:2.3.1.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Lipid A biosynthesis acyltransferase id=4785123 bin=GWC2_Methylomirabilis_70_24 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
lipid A biosynthesis acyltransferase
13_1_40cm_2_scaffold_4005_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15614..16402)
DNA (789bp) protein (263aa)
Uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=14627958 bin=bin7_NC10_sister species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_2_scaffold_4005_18
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

16454..17446
DNA (993bp) protein (331aa)
dihydroorotate dehydrogenase (EC:1.3.98.1); K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1] Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
dihydroorotate dehydrogenase (EC:1.3.98.1); K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1] id=14627933 bin=bin7_NC10_sister species=Mycobacterium sp. 155 genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
dihydroorotate dehydrogenase (EC:1.3.98.1)
13_1_40cm_2_scaffold_4005_19
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

17810..18052
DNA (243bp) protein (81aa)
id=14627932 Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
id=4430353 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_2_scaffold_4005_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18059..18187)
DNA (129bp) protein (43aa)
putative glyoxalase; K07104 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_2_scaffold_4005_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(18247..18912)
DNA (666bp) protein (222aa)
DNA repair protein RadC; K03630 DNA repair protein RadC Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
DNA repair protein RadC; K03630 DNA repair protein RadC id=14627930 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=bin7_NC10_sister organism_group=NC10
DNA repair protein RadC
13_1_40cm_2_scaffold_4005_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18982..19419)
DNA (438bp) protein (146aa)
hypothetical protein; K06925 UPF0079 ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein family UPF0079, ATPase id=4773673 bin=GWC2_Methylomirabilis_70_16 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_2_scaffold_4005_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(19416..20969)
DNA (1554bp) protein (518aa)
yjeF; carbohydrate kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein yjeF id=4773674 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
yjeF; carbohydrate kinase
13_1_40cm_2_scaffold_4005_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(20971..21408)
DNA (438bp) protein (146aa)
id=4870785 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=4773675 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Displaying 24 items

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