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13_1_40cm_2_scaffold_3867

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_3867_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(3..1442)
DNA (1440bp) protein (480aa)
recN; DNA repair protein RecN; K03631 DNA repair protein RecN (Recombination protein N) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
DNA repair and genetic recombination protein id=2598282 bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
recN; DNA repair and genetic recombination protein
13_1_40cm_2_scaffold_3867_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(1512..2369)
DNA (858bp) protein (286aa)
inorganic polyphosphate/ATP-NAD kinase (Poly(P)/ATP NAD kinase)(ppnK) (EC:2.7.1.23) Tax=GWA2_Rokubacteria_73_35_curated
inorganic polyphosphate/ATP-NAD kinase (Poly(P)/ATP NAD kinase)(ppnK) (EC:2.7.1.23)
Probable inorganic polyphosphate/ATP-NAD kinase id=2598283 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_3867_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(2384..3148)
DNA (765bp) protein (255aa)
hemolysin A; K06442 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
rRNA methylase; K06442 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] id=14627678 bin=bin7_NC10_sister species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hemolysin A
13_1_40cm_2_scaffold_3867_4
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(3186..3896)
DNA (711bp) protein (237aa)
Putative peptidase, S54 (Rhomboid) family id=2874876 bin=GWC2_Methylomirabilis_70_16 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
peptidase, S54 (Rhomboid) family Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
peptidase, S54 (Rhomboid) family
13_1_40cm_2_scaffold_3867_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3893..5137)
DNA (1245bp) protein (415aa)
processing peptidase (EC:3.4.24.64) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Peptidase M16B family, nonpeptidase-like protein id=2598286 bin=GWA2_Methylomirabilis_73_35 species=Leptolyngbya sp. PCC 6406 genus=Leptolyngbya taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
M16 family peptidase
13_1_40cm_2_scaffold_3867_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5134..6474)
DNA (1341bp) protein (447aa)
M16 family peptidase; K07263 zinc protease [EC:3.4.24.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
M16 family peptidase (EC:3.4.24.-)
Peptidase M16 domain protein id=2598289 bin=GWA2_Methylomirabilis_73_35 species=Desulfurivibrio alkaliphilus genus=Desulfurivibrio taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_3867_7
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

6677..7531
DNA (855bp) protein (285aa)
Putative uncharacterized protein id=2640540 bin=GWC2_Methylomirabilis_70_24 species=Magnaporthe poae genus=Magnaporthe taxon_order=Magnaporthales taxon_class=Sordariomycetes phylum=Ascomycota tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Uncharacterized protein Tax=GWC2_Rokubacteria_70_16_curated
ndr2, Ndr-2, Znr-1, cyc, cyclops, ndr1, znr1; nodal-related 2
13_1_40cm_2_scaffold_3867_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7637..8968
DNA (1332bp) protein (444aa)
peptidase S46 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Peptidase S46 id=2598295 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
periplasmic serine proteinase
13_1_40cm_2_scaffold_3867_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(9100..9447)
DNA (348bp) protein (116aa)
Histidine triad (HIT) protein id=4334202 bin=GWA2_Methylomirabilis_73_35 species=Thiothrix nivea genus=Thiothrix taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
histidine triad (HIT) protein; K02503 Hit-like protein involved in cell-cycle regulation Tax=GWA2_Rokubacteria_73_35_curated
histidine triad (HIT) protein
13_1_40cm_2_scaffold_3867_10
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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comp(9717..10343)
DNA (627bp) protein (209aa)
Hypothetical membrane protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7J9_GEMAT
hypothetical membrane protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
hypothetical membrane protein
13_1_40cm_2_scaffold_3867_11
unknown

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comp(10677..11114)
DNA (438bp) protein (146aa)

This feature has no annotations

13_1_40cm_2_scaffold_3867_12
unknown

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11254..11457
DNA (204bp) protein (68aa)

This feature has no annotations

13_1_40cm_2_scaffold_3867_13
unknown

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comp(11630..11758)
DNA (129bp) protein (43aa)

This feature has no annotations

13_1_40cm_2_scaffold_3867_trna_1
unknown

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comp(11665..11737)
DNA (73bp)
transferRNA
Displaying 14 items

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