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13_1_40cm_2_scaffold_6852

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_6852_1
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

comp(2..928)
DNA (927bp) protein (309aa)
YjgP/YjgQ family permease Tax=RBG_16_Acidobacteria_68_9_curated
Permease id=1875757 bin=GWD2_Deltaproteobacteria_55_8 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
membrane protein
13_1_40cm_2_scaffold_6852_2
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

comp(925..2040)
DNA (1116bp) protein (372aa)
Permease YjgP/YjgQ family protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G7W9_GEOUR rbh
YjgP/YjgQ family permease Tax=RBG_16_Acidobacteria_68_9_curated
YjgP/YjgQ family permease
13_1_40cm_2_scaffold_6852_3
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2136..2879
DNA (744bp) protein (248aa)
rRNA methyltransferase; K03218 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
RNA methyltransferase, TrmH family, group 3 n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G5A1_GEOUR
RNA methyltransferase
13_1_40cm_2_scaffold_6852_trna_1
unknown

Not on your lists

3064..3135
DNA (72bp)
transferRNA
13_1_40cm_2_scaffold_6852_trna_2
unknown

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3167..3249
DNA (83bp)
transferRNA
13_1_40cm_2_scaffold_6852_trna_3
unknown

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3276..3348
DNA (73bp)
transferRNA
13_1_40cm_2_scaffold_6852_4
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3365..3517
DNA (153bp) protein (51aa)
rpmG; 50S ribosomal protein L33; K02913 large subunit ribosomal protein L33 Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
50S ribosomal protein L33 id=4976240 bin=GWA2_Deltaproteo_65_63 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
50S ribosomal protein L33
13_1_40cm_2_scaffold_6852_trna_4
unknown

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3544..3617
DNA (74bp)
transferRNA
13_1_40cm_2_scaffold_6852_5
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3627..3839
DNA (213bp) protein (71aa)
Preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
SecE id=1948336 bin=GWD2_Deltaproteobacteria_55_8 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Preprotein translocase subunit SecE
13_1_40cm_2_scaffold_6852_6
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3839..4390
DNA (552bp) protein (184aa)
NusG antitermination factor; K02601 transcriptional antiterminator NusG Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
nusG; transcription antitermination protein NusG; K02601 transcriptional antiterminator NusG id=15194035 bin=GWC2_NOV_55_46 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_NOV_55_46 organism_group=Proteobacteria
nusG; transcription elongation factor NusG
13_1_40cm_2_scaffold_6852_7
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4406..4828
DNA (423bp) protein (141aa)
50S ribosomal protein L11; K02867 large subunit ribosomal protein L11 Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
50S ribosomal protein L11 id=1948332 bin=GWD2_Deltaproteobacteria_55_8 species=Desulfovibrio africanus genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
50S ribosomal protein L11
13_1_40cm_2_scaffold_6852_8
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4851..5561
DNA (711bp) protein (237aa)
rplA; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1 Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
50S ribosomal protein L1 id=1948330 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Thermodesulfobacterium taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
50S ribosomal protein L1
13_1_40cm_2_scaffold_6852_9
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5570..6121
DNA (552bp) protein (184aa)
50S ribosomal protein L10; K02864 large subunit ribosomal protein L10 Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
50S ribosomal protein L10 id=1948328 bin=GWD2_Deltaproteobacteria_55_8 species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
rplJ; 50S ribosomal protein L10
13_1_40cm_2_scaffold_6852_10
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6158..6541
DNA (384bp) protein (128aa)
rplL; 50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12 Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
50S ribosomal protein L7/L12 id=1948326 bin=GWD2_Deltaproteobacteria_55_8 species=Desulfurispirillum indicum genus=Desulfurispirillum taxon_order=Chrysiogenales taxon_class=Chrysiogenetes phylum=Chrysiogenetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
50S ribosomal protein L7/L12
13_1_40cm_2_scaffold_6852_11
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6578..9247
DNA (2670bp) protein (890aa)
rpoB; DNA-directed RNA polymerase subunit beta; K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=RPOB_GEOUR
Displaying 15 items

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