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13_1_40cm_2_scaffold_7330

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_7330_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3..1028)
DNA (1026bp) protein (342aa)
relA; GTP pyrophosphokinase (EC:2.7.6.5) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
relA; GTP pyrophosphokinase (EC:2.7.6.5) id=14627007 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
relA; GTP pyrophosphokinase (EC:2.7.6.5)
13_1_40cm_2_scaffold_7330_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1308..2249)
DNA (942bp) protein (314aa)
secF; preprotein translocase subunit SecF; K03074 preprotein translocase subunit SecF Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
secF; preprotein translocase subunit SecF; K03074 preprotein translocase subunit SecF id=14627006 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Omnitrophica tax=bin7_NC10_sister organism_group=NC10
secF; preprotein translocase subunit SecF
13_1_40cm_2_scaffold_7330_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2246..3802)
DNA (1557bp) protein (519aa)
protein translocase subunit; K03072 preprotein translocase subunit SecD Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
protein translocase subunit; K03072 preprotein translocase subunit SecD id=14627005 bin=bin7_NC10_sister species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
protein translocase subunit
13_1_40cm_2_scaffold_7330_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3795..4070)
DNA (276bp) protein (92aa)
Preprotein translocase subunit YajC id=4319700 bin=GWA2_Methylomirabilis_73_35 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
yajC; Preprotein translocase subunit YajC; K03210 preprotein translocase subunit YajC Tax=GWA2_Rokubacteria_73_35_curated
yajC; preprotein translocase subunit YajC
13_1_40cm_2_scaffold_7330_5
unknown

Not on your lists

4381..4881
DNA (501bp) protein (167aa)

This feature has no annotations

13_1_40cm_2_scaffold_7330_6
unknown

Not on your lists

comp(4771..4983)
DNA (213bp) protein (71aa)

This feature has no annotations

13_1_40cm_2_scaffold_7330_7
unknown

Not on your lists

comp(5182..5379)
DNA (198bp) protein (66aa)

This feature has no annotations

13_1_40cm_2_scaffold_7330_8
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

5533..6084
DNA (552bp) protein (184aa)
ABC-type branched-chain amino acid transport system, periplasmic component id=3209650 bin=GWC2_Methylomirabilis_70_24 species=Idiomarina sp. A28L genus=Idiomarina taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
livK; branched-chain amino acid ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein Tax=GWA2_Rokubacteria_70_23_curated
branched-chain amino acid ABC transporter substrate-binding protein
13_1_40cm_2_scaffold_7330_9
Actinoplanes missouriensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6173..6916
DNA (744bp) protein (248aa)
Putative Asp/Glu/Hydantoin racemase n=1 Tax=Actinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64 / JCM 3121 / NCIMB 12654 / NBRC 102363 / 431) RepID=I0HD65_ACTM4 rbh
putative Asp/Glu/Hydantoin racemase
Putative Asp/Glu/Hydantoin racemase {ECO:0000313|EMBL:BAL90952.1}; TaxID=512565 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes missourie
13_1_40cm_2_scaffold_7330_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(6913..8040)
DNA (1128bp) protein (376aa)
tgt; tRNA-guanine transglycosylase (queuine/archaeosine tRNA-ribosyltransferase) (EC:2.4.2.29) Tax=GWA2_Rokubacteria_73_35_curated
tgt; tRNA-guanine transglycosylase (queuine/archaeosine tRNA-ribosyltransferase) (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase id=4319701 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_7330_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8054..9088)
DNA (1035bp) protein (345aa)
S-adenosylmethionine; K07568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
S-adenosylmethionine:tRNA ribosyltransferase-isomerase id=4319702 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
S-adenosylmethionine/tRNA-ribosyltransferase-isomerase
13_1_40cm_2_scaffold_7330_12
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9113..10681)
DNA (1569bp) protein (523aa)
Uncharacterized protein n=1 Tax=Geobacter sp. (strain M21) RepID=C6E8S2_GEOSM
hypothetical protein Tax=GWC2_Geobacteraceae_58_44_curated
hypothetical protein
13_1_40cm_2_scaffold_7330_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10733..11029)
DNA (297bp) protein (99aa)
export-related chaperone CsaA; K06878 tRNA-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Export-related chaperone CsaA id=4284345 bin=GWC2_Methylomirabilis_70_16 species=Paracoccus denitrificans genus=Paracoccus taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Export-related chaperone CsaA
13_1_40cm_2_scaffold_7330_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11072..12190)
DNA (1119bp) protein (373aa)
SpoIID/LytB domain-containing protein; K06381 stage II sporulation protein D Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
SpoIID/LytB domain protein id=4319706 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cell division protein
13_1_40cm_2_scaffold_7330_15
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12187..12402)
DNA (216bp) protein (72aa)
Putative uncharacterized protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GA00_GEOUR
hypothetical protein Tax=GWC2_Geobacteraceae_58_44_curated
hypothetical protein
13_1_40cm_2_scaffold_7330_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(12407..13474)
DNA (1068bp) protein (356aa)
ruvB; Holliday junction DNA helicase RuvB; K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12] Tax=GWA2_Rokubacteria_73_35_curated
ruvB; Holliday junction DNA helicase RuvB (EC:3.6.4.12)
Holliday junction ATP-dependent DNA helicase RuvB id=4319707 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_7330_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13471..14124)
DNA (654bp) protein (218aa)
DNA recombination protein RuvA domain I; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12] Tax=GWA2_Rokubacteria_73_35_curated
DNA recombination protein RuvA domain I; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12] id=14626993 bin=bin7_NC10_sister species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
DNA recombination protein RuvA domain I
13_1_40cm_2_scaffold_7330_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14132..14500)
DNA (369bp) protein (123aa)
crossover junction endodeoxyribonuclease RuvC (EC:3.1.22.4); K01159 crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
crossover junction endodeoxyribonuclease RuvC (EC:3.1.22.4)
crossover junction endodeoxyribonuclease ruvC id=4319708 bin=GWA2_Methylomirabilis_73_35 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_7330_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14637..15386)
DNA (750bp) protein (250aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14626991 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_2_scaffold_7330_20
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(15392..16444)
DNA (1053bp) protein (351aa)
thioesterase superfamily protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Thioesterase superfamily protein id=3467151 bin=GWA2_Methylomirabilis_73_35 species=Vulcanisaeta moutnovskia genus=Vulcanisaeta taxon_order=Thermoproteales taxon_class=Thermoprotei phylum=Crenarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thioesterase
13_1_40cm_2_scaffold_7330_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(16462..17640)
DNA (1179bp) protein (393aa)
Heme-binding protein A (Hemin-binding lipoprotein) id=3467128 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
heme-binding protein A (Hemin-binding lipoprotein); K02035 peptide/nickel transport system substrate-binding protein Tax=GWA2_Rokubacteria_73_35_curated
family 5 extracellular solute-binding protein
Displaying 21 items

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