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13_1_40cm_2_scaffold_820

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_820_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(152..868)
DNA (717bp) protein (239aa)
uncharacterized LOC100208015 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4806968 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_820_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(868..1437)
DNA (570bp) protein (190aa)
Uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=14628104 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_2_scaffold_820_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1434..2813)
DNA (1380bp) protein (460aa)
fimbrial assembly family protein; K02461 general secretion pathway protein L Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Fimbrial assembly family protein id=4806970 bin=GWA2_Methylomirabilis_73_35 species=Desulfovibrio africanus genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
fimbrial assembly family protein
13_1_40cm_2_scaffold_820_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(2964..3905)
DNA (942bp) protein (314aa)
general secretion pathway protein K; K02460 general secretion pathway protein K Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=14628119 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
hypothetical protein
13_1_40cm_2_scaffold_820_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3902..4516)
DNA (615bp) protein (205aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
gspJ2; protein GspJ2; K02459 general secretion pathway protein J id=14628120 bin=bin7_NC10_sister species=Methylohalobius crimeensis genus=Methylohalobius taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_2_scaffold_820_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4516..4971)
DNA (456bp) protein (152aa)
general secretion pathway protein H; K02458 general secretion pathway protein I Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative General secretion pathway protein I, GspI (Modular protein) id=3269003 bin=GWC2_Methylomirabilis_70_16 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
general secretion pathway protein I
13_1_40cm_2_scaffold_820_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(4968..5408)
DNA (441bp) protein (147aa)
xpsH; general secretion pathway protein H; K02457 general secretion pathway protein H Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
General secretion pathway protein H id=3269002 bin=GWC2_Methylomirabilis_70_16 species=Verminephrobacter eiseniae genus=Verminephrobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
general secretion pathway protein H
13_1_40cm_2_scaffold_820_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5393..5974)
DNA (582bp) protein (194aa)
General secretion pathway protein G Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Pseudopilin, cryptic, general secretion pathway id=3269001 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
gspG; pseudopilin, cryptic, general secretion pathway
13_1_40cm_2_scaffold_820_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5974..7185)
DNA (1212bp) protein (404aa)
gspF; general secretory pathway component, cryptic Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
gspF; general secretory pathway component, cryptic id=14627802 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
gspF; general secretory pathway component, cryptic
13_1_40cm_2_scaffold_820_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7193..8887)
DNA (1695bp) protein (565aa)
General secretion pathway protein E (Type II traffic warden ATPase) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
General secretion pathway protein E (Type II traffic warden ATPase) id=14627801 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
General secretion pathway protein E (Type II traffic warden ATPase)
13_1_40cm_2_scaffold_820_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8891..9646
DNA (756bp) protein (252aa)
Zinc/iron transporter Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Zinc/iron transporter id=14627800 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
Zinc/iron transporter
13_1_40cm_2_scaffold_820_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9662..10186
DNA (525bp) protein (175aa)
3-dehydroquinate dehydratase (EC:4.2.1.10); K03786 3-dehydroquinate dehydratase II [EC:4.2.1.10] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
aroQ; 3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase id=1709621 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum hydrothermale genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_820_13
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

10283..11332
DNA (1050bp) protein (350aa)
RNA polymerase sigma-E factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
RNA polymerase sigma-E factor id=1709623 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RNA polymerase sigma-e factor
13_1_40cm_2_scaffold_820_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11329..12129
DNA (801bp) protein (267aa)
propionyl-CoA carboxylase subunit beta Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative propionyl-CoA carboxylase beta subunit id=4243671 bin=GWF2_Methylomirabilis_70_14 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
propionyl-CoA carboxylase
13_1_40cm_2_scaffold_820_15
Crinalium epipsammum, Crinalium, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

12920..13207
DNA (288bp) protein (96aa)
PAS/PAC sensor hybrid histidine kinase {ECO:0000313|EMBL:AFZ13783.1}; TaxID=1173022 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Crinalium.;" source="Crinalium epipsammum
13_1_40cm_2_scaffold_820_16
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13312..13722
DNA (411bp) protein (137aa)
Sensory box histidine kinase/response regulator n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MYC8_CORCM
rpfC; sensory box histidine kinase/response regulator
Sensory box histidine kinase/response regulator {ECO:0000313|EMBL:AFE10187.1}; TaxID=1144275 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Cora
13_1_40cm_2_scaffold_820_17
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13827..14771
DNA (945bp) protein (315aa)
Integrase catalytic region n=1 Tax=Burkholderia cenocepacia (strain MC0-3) RepID=B1JWK5_BURCC rbh
Integrase catalytic region {ECO:0000313|EMBL:CDX21153.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium pl
integrase catalytic subunit
13_1_40cm_2_scaffold_820_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(14782..16527)
DNA (1746bp) protein (582aa)
pckG; phosphoenolpyruvate carboxykinase [GTP] (PEP carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) (EC:4.1.1.32) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
pckG; phosphoenolpyruvate carboxykinase [GTP] (PEP carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) (EC:4.1.1.32)
Phosphoenolpyruvate carboxykinase [GTP] id=1709628 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_820_19
unknown

Not on your lists

16555..16674
DNA (120bp) protein (40aa)

This feature has no annotations

13_1_40cm_2_scaffold_820_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16671..17414
DNA (744bp) protein (248aa)
cobalamin 5'-phosphate synthase; K02233 adenosylcobinamide-GDP ribazoletransferase [EC:2.7.8.26] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cobalamin synthase id=1709629 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cobalamin 5'-phosphate synthase
13_1_40cm_2_scaffold_820_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

17393..18004
DNA (612bp) protein (204aa)
metal dependent phosphohydrolase; K15634 probable phosphoglycerate mutase [EC:5.4.2.1] Tax=GWA2_Rokubacteria_73_35_curated
Metal dependent phosphohydrolase id=1709630 bin=GWA2_Methylomirabilis_73_35 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phosphoglucomutase
13_1_40cm_2_scaffold_820_22
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(18137..18682)
DNA (546bp) protein (182aa)
id=14625963 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
id=14625963 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_2_scaffold_820_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18931..19608)
DNA (678bp) protein (226aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=1709660 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_2_scaffold_820_24
RBG_13_Deltaproteobacteria_43_22_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19609..21162)
DNA (1554bp) protein (518aa)
Biotin dependent acyl-CoA carboxylase, putative n=1 Tax=Bacillus bataviensis LMG 21833 RepID=K6DEI5_9BACI
biotin carboxylase Tax=RBG_13_Deltaproteobacteria_43_22_curated
biotin dependent acyl-CoA carboxylase
13_1_40cm_2_scaffold_820_25
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

21195..21569
DNA (375bp) protein (125aa)
RNA-binding S4 domain-containing protein; K04762 ribosome-associated heat shock protein Hsp15 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
RNA-binding S4 id=4820065 bin=GWC2_Methylomirabilis_70_16 species=Azospirillum brasilense genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hslR; ribosome-associated heat shock protein
13_1_40cm_2_scaffold_820_26
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(21638..22489)
DNA (852bp) protein (284aa)
h16_A2129; Zn-dependent hydrolase id=14625954 bin=bin7_NC10_sister species=Herbaspirillum sp. JC206 genus=Herbaspirillum taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
h16_A2129; Zn-dependent hydrolase Tax=CSP1_6_Rokubacteria
hypothetical protein
13_1_40cm_2_scaffold_820_27
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

22782..23348
DNA (567bp) protein (189aa)
cobalbumin biosynthesis protein (EC:2.7.7.62); K02231 adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62] id=14627278 bin=bin7_NC10_sister species=Thermus aquaticus genus=Thermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=bin7_NC10_sister organism_group=NC10
cobalbumin biosynthesis protein (EC:2.7.7.62); K02231 adenosylcobinamide kinase / adenosylcobinamide-phosphate guanylyltransferase [EC:2.7.1.156 2.7.7.62] Tax=CSP1_6_Rokubacteria
cobalbumin biosynthesis protein (EC:2.7.7.62)
13_1_40cm_2_scaffold_820_28
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

23365..24381
DNA (1017bp) protein (339aa)
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC:2.4.2.21); K00768 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21] Tax=GWA2_Rokubacteria_
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC:2.4.2.21)
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase id=4820068 bin=GWC2_Methylomirabilis_70_16 species=Desulfotomaculum ruminis genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_2_scaffold_820_29
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

24382..25749
DNA (1368bp) protein (456aa)
cobB; cobyrinic acid a,c-diamide synthase; K02224 cobyrinic acid a,c-diamide synthase [EC:6.3.5.9 6.3.5.11] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Cobyrinic acid A,C-diamide synthase n=1 Tax=Desulfovibrio africanus str. Walvis Bay RepID=F3Z2C4_DESAF rbh
cbiA; cob(II)yrinate a,c-diamide synthase
13_1_40cm_2_scaffold_820_30
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

25743..26135
DNA (393bp) protein (131aa)
Periplasmic binding protein id=4417584 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
periplasmic binding protein; K02016 iron complex transport system substrate-binding protein Tax=GWC2_Rokubacteria_70_16_curated
periplasmic-binding protein
Displaying 30 items

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