ggKbase home page

13_1_40cm_2_scaffold_851

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_851_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

1..729
DNA (729bp) protein (243aa)
glycine cleavage system t protein (EC:2.1.2.10); K06980 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
glycine cleavage system t protein (EC:2.1.2.10); K06980 id=14627031 bin=bin7_NC10_sister species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
glycine cleavage system T protein
13_1_40cm_2_scaffold_851_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

742..2754
DNA (2013bp) protein (671aa)
hypothetical protein; K06888 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4996873 bin=GWA2_Methylomirabilis_73_35 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_2_scaffold_851_3
Allochromatium vinosum, Allochromatium, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2741..3463)
DNA (723bp) protein (241aa)
7-cyano-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00195886}; EC=6.3.4.20 {ECO:0000256|HAMAP-Rule:MF_01633, ECO:0000256|SAAS:SAAS00029421};; 7-cyano-7-carbaguanine
7-cyano-7-deazaguanine synthase n=1 Tax=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) RepID=D3RQ61_ALLVD
exsB protein
13_1_40cm_2_scaffold_851_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

3704..3910
DNA (207bp) protein (69aa)
thiamine biosynthesis protein ThiS; K03154 sulfur carrier protein id=14627029 bin=bin7_NC10_sister species=Neptuniibacter caesariensis genus=Neptuniibacter taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
thiamine biosynthesis protein ThiS Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_2_scaffold_851_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3924..4706
DNA (783bp) protein (261aa)
thiG; thiazole synthase; K03149 thiamine biosynthesis ThiG Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Thiazole synthase id=4800301 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
thiG; thiamine biosynthesis protein ThiG
13_1_40cm_2_scaffold_851_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

4691..5314
DNA (624bp) protein (208aa)
thiE2; thiamine-phosphate pyrophosphorylase (EC:2.5.1.3); K00788 thiamine-phosphate pyrophosphorylase [EC:2.5.1.3] Tax=GWA2_Rokubacteria_73_35_curated
Thiamine-phosphate synthase id=5006705 bin=GWA2_Methylomirabilis_73_35 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tenI-2; carboxythiazole phosphate tautomerase
13_1_40cm_2_scaffold_851_7
unknown

Not on your lists

5311..5532
DNA (222bp) protein (74aa)

This feature has no annotations

13_1_40cm_2_scaffold_851_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5546..6871
DNA (1326bp) protein (442aa)
amidohydrolase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Amidohydrolase id=4800307 bin=GWC2_Methylomirabilis_70_16 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
amidohydrolase
13_1_40cm_2_scaffold_851_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6876..7679
DNA (804bp) protein (268aa)
ABC transporter periplasmic ligand binding protein; K02016 iron complex transport system substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Periplasmic binding protein id=5006709 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Methylovorus taxon_order=Methylophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
substrate-binding protein
13_1_40cm_2_scaffold_851_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

7764..9209
DNA (1446bp) protein (482aa)
tldD; peptidase TldD Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative peptidase TldD id=4800311 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
tldD; peptidase TldD
13_1_40cm_2_scaffold_851_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9206..10552
DNA (1347bp) protein (449aa)
pmbA; protease pmbA; K03592 PmbA protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Peptidase U62 id=5006712 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_2_scaffold_851_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10565..11350
DNA (786bp) protein (262aa)
TatD-related deoxyribonuclease; K03424 TatD DNase family protein [EC:3.1.21.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Deoxyribonuclease id=3951906 bin=GWF2_Methylomirabilis_70_14 species=Desmospora sp. 8437 genus=Desmospora taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
deoxyribonuclease
13_1_40cm_2_scaffold_851_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11369..12091
DNA (723bp) protein (241aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein; K06889 id=14627019 bin=bin7_NC10_sister species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_2_scaffold_851_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12088..13092
DNA (1005bp) protein (335aa)
peptidase T-like protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Peptidase M20B, peptidase T id=1894689 bin=GWD2_Deltaproteobacteria_55_8 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
peptidase T-like protein
Displaying 14 items

View Taxonomy