ggKbase home page

13_1_40cm_2_scaffold_12233

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_12233_1
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

2..382
DNA (381bp) protein (127aa)
Glycine cleavage system H protein n=3 Tax=Geobacillus RepID=C9RUM8_GEOSY
gcsH4; glycine cleavage system protein H; K02437 glycine cleavage system H protein Tax=RBG_16_Archaea_50_20_curated
glycine cleavage system protein H
13_1_40cm_2_scaffold_12233_2
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

701..2890
DNA (2190bp) protein (730aa)
putative ATP-dependent helicase; K03724 ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-] Tax=RBG_16_Archaea_50_20_curated
ATP-dependent helicase n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N385_9ARCH
ATP-dependent helicase
13_1_40cm_2_scaffold_12233_3
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

2959..4704
DNA (1746bp) protein (582aa)
putative ATP-dependent helicase; K03724 ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-] Tax=RBG_16_Archaea_50_20_curated
DEAD/DEAH box helicase; K03724 ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-] id=18315097 bin=Nanosalinarum tax=Nanosalinarum
ATP dependent helicase, lhr family
13_1_40cm_2_scaffold_12233_4

Not on your lists

comp(4731..5570)
DNA (840bp) protein (280aa)
putative N-4 cytosine-specific methyltransferase (EC:2.1.1.113)
modification methylase n=1 Tax=Calescamantes bacterium SCGC AAA471-M6 RepID=UPI0003B54648
Cytosine methylase, similar to N4-cytosine methylase {ECO:0000313|EMBL:CAH04249.1}; TaxID=285013 species="Viruses; dsDNA viruses, no RNA stage; Bicaudaviridae; unclassified Bicaudaviridae.;" source="S
13_1_40cm_2_scaffold_12233_5
unknown

Not on your lists

5843..6013
DNA (171bp) protein (57aa)

This feature has no annotations

13_1_40cm_2_scaffold_12233_6
unknown

Not on your lists

6047..6232
DNA (186bp) protein (62aa)

This feature has no annotations

13_1_40cm_2_scaffold_12233_7
Bacillus cereus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(6686..7261)
DNA (576bp) protein (192aa)
40-residue YVTN family beta-propeller n=1 Tax=Bacillus cereus MC118 RepID=R8LAF5_BACCE
40-residue YVTN family beta-propeller {ECO:0000313|EMBL:EOP18932.1}; TaxID=1053218 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group.;" source="Bacillus
YVTN beta-propeller repeat-containing protein
13_1_40cm_2_scaffold_12233_8
Streptomyces sp. AA4, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7378..8958)
DNA (1581bp) protein (527aa)
hypothetical protein n=1 Tax=Terracoccus sp. 273MFTsu3.1 RepID=UPI0003702B8D
Predicted protein {ECO:0000313|EMBL:EFL05517.1}; TaxID=591158 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. AA4.;"
putative peptidase
13_1_40cm_2_scaffold_12233_9
Candidatus Caldiarchaeum subterraneum, Candidatus Caldiarchaeum, Thaumarchaeota, Archaea

Not on your lists

9295..9939
DNA (645bp) protein (215aa)
Metallo-beta-lactamase family protein n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6N315_9ARCH
Metallo-beta-lactamase family protein {ECO:0000313|EMBL:BAJ46721.1}; TaxID=311458 species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota; Candidatus Caldiarchaeum.;" source="Candidatus Caldiarc
beta-lactamase domain protein
13_1_40cm_2_scaffold_12233_10
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

Not on your lists

9984..10430
DNA (447bp) protein (149aa)
Pyridoxamine 5'-phosphate oxidase-related fmn-binding protein n=1 Tax=Streptomyces tsukubaensis NRRL18488 RepID=I2MXG2_9ACTO
pyridoxamine 5'-phosphate oxidase-related FMN-binding protein Tax=RBG_16_Chloroflexi_68_14_curated
hypothetical protein
13_1_40cm_2_scaffold_12233_11
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

10776..11174
DNA (399bp) protein (133aa)
Putative oxidoreductase; K07305 peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] Tax=RBG_16_Ignavibacteria_34_14_curated
Peptide methionine sulfoxide reductase MsrB n=1 Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KUM0_METHD
methionine-R-sulfoxide reductase
13_1_40cm_2_scaffold_12233_12
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

11821..12384
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Thermofilum sp. 1910b RepID=S5Z8H2_9CREN
hypothetical protein Tax=RBG_13_Bathyarchaeota_46_16b_curated
hypothetical protein
13_1_40cm_2_scaffold_12233_13
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

12388..13191
DNA (804bp) protein (268aa)
Uncharacterized protein n=1 Tax=Thermofilum pendens (strain Hrk 5) RepID=A1RZ05_THEPD
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
hypothetical protein
13_1_40cm_2_scaffold_12233_14
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

13300..13878
DNA (579bp) protein (193aa)
Uncharacterized protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TSS5_METAC
RNA binding protein; K07573 exosome complex component CSL4 Tax=RBG_16_Archaea_50_20_curated
hypothetical protein
13_1_40cm_2_scaffold_12233_15
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

13875..14162
DNA (288bp) protein (96aa)
DNA-directed RNA polymerase subunit L n=1 Tax=Thermococcus barophilus (strain DSM 11836 / MP) RepID=F0LJJ8_THEBM
DNA-directed RNA polymerase subunit L Tax=RBG_13_Bathyarchaeota_46_16b_curated
DNA-directed RNA polymerase subunit L
13_1_40cm_2_scaffold_12233_16
Prevotella sp. oral taxon 299, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

14178..14858
DNA (681bp) protein (227aa)
hypothetical protein n=1 Tax=Prevotella nanceiensis RepID=UPI00036099CA
HAD hydrolase, family IA
HAD hydrolase, family IA {ECO:0000313|EMBL:EFC71051.1}; TaxID=575614 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella sp. oral taxon 299 s
13_1_40cm_2_scaffold_12233_17
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

14892..15272
DNA (381bp) protein (127aa)
Uncharacterized protein n=2 Tax=Pyrococcus furiosus RepID=I6V067_9EURY
hypothetical protein Tax=RBG_16_Archaea_50_20_curated
hypothetical protein
13_1_40cm_2_scaffold_12233_18
unknown

Not on your lists

15374..15754
DNA (381bp) protein (127aa)

This feature has no annotations

13_1_40cm_2_scaffold_12233_19
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

15862..16122
DNA (261bp) protein (87aa)
DNA-directed RNA polymerase subunit n=1 Tax=Thermococcus litoralis DSM 5473 RepID=H3ZPL5_THELI
DNA-directed RNA polymerase subunit M Tax=RBG_16_Archaea_50_20_curated
DNA-directed RNA polymerase subunit M
13_1_40cm_2_scaffold_12233_20
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

16203..16772
DNA (570bp) protein (190aa)
proliferating cell nuclear antigen PcnA; K04802 proliferating cell nuclear antigen Tax=RBG_16_Archaea_50_20_curated
proliferating cell nuclear antigen PcnA
proliferating cell nuclear antigen PcnA id=14428073 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Displaying 20 items

View Taxonomy