ggKbase home page

13_1_40cm_2_scaffold_345

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_345_1
Collinsella sp. CAG:398, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

21..806
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Collinsella sp. CAG:398 RepID=R6ZCC9_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CDD43850.1}; TaxID=1262852 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" sourc
cobyrinic acid a,c-diamide synthase
13_1_40cm_2_scaffold_345_2
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(935..1702)
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:273 RepID=R7L878_9CLOT
Cobyrinic acid ac-diamide synthase; K03496 chromosome partitioning protein Tax=GWA2_Rokubacteria_70_23_curated
chromosome segregation ATPase
13_1_40cm_2_scaffold_345_3
RIFCSPLOWO2_12_FULL_Bacteroidetes_37_12_curated, Bacteroidetes, Bacteria

Not on your lists

comp(2031..3161)
DNA (1131bp) protein (377aa)
saccharopine dehydrogenase Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_37_12_curated
cap:CLDAP_29660 putative L-lysine 6-dehydrogenase id=8266064 bin=CD_OP8_4m species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
putative L-lysine 6-dehydrogenase
13_1_40cm_2_scaffold_345_4
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

comp(3230..4429)
DNA (1200bp) protein (400aa)
Hypothetical conserved protein n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SUS4_9BACT
digeranylgeranylglycerophospholipid reductase Tax=RBG_13_Bathyarchaeota_46_16b_curated
hypothetical protein
13_1_40cm_2_scaffold_345_5
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(4437..4952)
DNA (516bp) protein (172aa)
Transcription elongation factor NusA n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=Q8TXG0_METKA
nusA; transcription elongation factor NusA-like protein Tax=RBG_16_Archaea_50_20_curated
nusA; transcription elongation factor NusA-like protein
13_1_40cm_2_scaffold_345_6
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

5172..6311
DNA (1140bp) protein (380aa)
succinyl-CoA synthetase subunit beta; K01903 succinyl-CoA synthetase beta subunit [EC:6.2.1.5] Tax=RBG_13_Bathyarchaeota_46_16b_curated
succinyl-CoA synthetase subunit beta (EC:6.2.1.5)
Succinyl-CoA ligase [ADP-forming] subunit beta n=1 Tax=Thermosphaera aggregans (strain DSM 11486 / M11TL) RepID=D5U2D8_THEAM
13_1_40cm_2_scaffold_345_7
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

6315..7202
DNA (888bp) protein (296aa)
sucD; succinyl-CoA synthetase subunit alpha (EC:6.2.1.5); K01902 succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] Tax=RBG_13_Bathyarchaeota_46_16b_curated
Succinyl-CoA ligase [ADP-forming] subunit alpha n=1 Tax=Methanotorris igneus (strain DSM 5666 / JCM 11834 / Kol 5) RepID=F6BCW4_METIK
succinyl-CoA synthetase subunit alpha
13_1_40cm_2_scaffold_345_8
RBG_19FT_COMBO_Deltaproteobacteria_43_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7219..7581)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0LFR1_9BACT
phnB; glyoxalase/bleomycin resistance protein/dioxygenase Tax=RBG_19FT_COMBO_Deltaproteobacteria_43_11_curated
hypothetical protein
13_1_40cm_2_scaffold_345_9
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists


comp(7887..8735)
DNA (849bp) protein (283aa)
putative ribosomal RNA small subunit methyltransferase A; K02528 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] Tax=RBG_16_Archaea_50_20_curated
Probable ribosomal RNA small subunit methyltransferase A n=1 Tax=Thermococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) RepID=RSMA_THEKO
ksgA; dimethyladenosine transferase
13_1_40cm_2_scaffold_345_10
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(8740..9324)
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Pyrococcus sp. (strain NA2) RepID=F4HK25_PYRSN
DNA-binding protein; K07572 putative nucleotide binding protein Tax=RBG_16_Archaea_50_20_curated
hypothetical protein
13_1_40cm_2_scaffold_345_11
RBG_16_Archaea_50_20_curated, Archaea

Not on your lists

comp(9469..9798)
DNA (330bp) protein (110aa)
RNA polymerase Rpb4; K03051 DNA-directed RNA polymerase subunit F [EC:2.7.7.6] Tax=RBG_16_Archaea_50_20_curated
DNA-directed RNA polymerase, subunit F (EC:2.7.7.6)
Putative RNA polymerase Rpb4 n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IJP5_NITGG
13_1_40cm_2_scaffold_345_12
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

10201..11214
DNA (1014bp) protein (338aa)
methyltransferase-like protein; K07446 tRNA (guanine10-N2)-dimethyltransferase [EC:2.1.1.213] Tax=RBG_13_Bathyarchaeota_46_16b_curated
tRNA (guanine(10)-N2)-dimethyltransferase n=1 Tax=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) RepID=TMG10_METTH
methyltransferase-like protein
13_1_40cm_2_scaffold_345_13
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

11214..12134
DNA (921bp) protein (307aa)
Ribonuclease Z (EC:3.1.26.11)
Ribonuclease Z n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=RNZ_METAC
ribonuclease Z Tax=RBG_13_Bathyarchaeota_46_16b_curated
13_1_40cm_2_scaffold_345_14
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(12168..12707)
DNA (540bp) protein (180aa)
pyridoxine/pyridoxamine 5'-phosphate oxidase (EC:1.4.3.5)
Pyridoxine/pyridoxamine 5'-phosphate oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; EC=1.4.3.5 {ECO:0000256|HAMAP-Rule:MF_01629};; PNP/PMP oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; Pyridoxal 5'-phosphate
Pyridoxine/pyridoxamine 5'-phosphate oxidase n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SEC4_RHOMR
13_1_40cm_2_scaffold_345_15
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

comp(13123..13755)
DNA (633bp) protein (211aa)
Dephospho-CoA kinase, CoaE n=1 Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CUJ5_9ARCH
dephospho-CoA kinase, CoaE Tax=RBG_13_Bathyarchaeota_38_9_curated
hypothetical protein
13_1_40cm_2_scaffold_345_16
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

13907..14401
DNA (495bp) protein (165aa)
LigT; 2'-5' RNA ligase; K01975 2'-5' RNA ligase [EC:6.5.1.-] Tax=RBG_13_Bathyarchaeota_38_9_curated
2'-5' RNA ligase, Lig T n=1 Tax=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) RepID=A2BJU4_HYPBU
2'-5' RNA ligase, Lig T
13_1_40cm_2_scaffold_345_17
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists


14453..15877
DNA (1425bp) protein (475aa)
tRNA adenylyltransferase (EC:2.7.7.72); K07558 tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72] Tax=RBG_13_Bathyarchaeota_38_9_curated
hypothetical protein n=2 Tax=unclassified candidate division pSL4 RepID=UPI00035C997D
cca; tRNA CCA-pyrophosphorylase
13_1_40cm_2_scaffold_345_18

Not on your lists

15853..16626
DNA (774bp) protein (258aa)
Marine sediment metagenome DNA, contig: S01H1_L00574 {ECO:0000313|EMBL:GAF84883.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
Ser/Thr protein kinase id=14428117 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Ser/Thr protein kinase
13_1_40cm_2_scaffold_345_19
uncultured Candidatus Nitrosocaldus sp., Candidatus Nitrosocaldus, Crenarchaeota, Archaea

Not on your lists

comp(16629..17495)
DNA (867bp) protein (289aa)
ABC transporter permease protein n=1 Tax=uncultured Candidatus Nitrosocaldus sp. RepID=Q1ER87_9CREN
ABC transporter permease protein {ECO:0000313|EMBL:BAE95239.1}; TaxID=766501 species="Archaea; Crenarchaeota; Candidatus Nitrosocaldus; environmental samples.;" source="uncultured Candidatus Nitrosoca
ABC transporter permease
13_1_40cm_2_scaffold_345_20
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

comp(17486..18325)
DNA (840bp) protein (280aa)
ABC transporter n=1 Tax=Candidatus Caldiarchaeum subterraneum RepID=Q4LED5_9ARCH
ABC transporter permease; K09686 antibiotic transport system permease protein Tax=RBG_13_Bathyarchaeota_46_16b_curated
ABC-2 type transport system protein
13_1_40cm_2_scaffold_345_21
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

comp(18322..19299)
DNA (978bp) protein (326aa)
Antibiotic transport system ATP-binding protein n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SQX0_9BACT
ABC transporter-like protein; K09687 antibiotic transport system ATP-binding protein Tax=RBG_13_Bathyarchaeota_46_16b_curated
ABC transporter ATP-binding protein
13_1_40cm_2_scaffold_345_22
RBG_13_Bathyarchaeota_46_16b_curated, Bathyarchaeota, Archaea

Not on your lists

comp(19380..22241)
DNA (2862bp) protein (954aa)
DEAD/DEAH box helicase; K03724 ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-] Tax=RBG_13_Bathyarchaeota_46_16b_curated
ATP-dependent helicase n=1 Tax=uncultured archaeon GZfos18B6 RepID=Q64DL1_9ARCH rbh
DEAD/DEAH box helicase
13_1_40cm_2_scaffold_345_23
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

22410..22769
DNA (360bp) protein (120aa)
Transcriptional regulator, PadR family n=2 Tax=Clostridiales RepID=B0NE98_CLOSV
PadR family transcriptional regulator Tax=RBG_13_Bathyarchaeota_38_9_curated
PadR-like family transcriptional regulator
13_1_40cm_2_scaffold_345_24
unknown

Not on your lists

22784..23515
DNA (732bp) protein (244aa)

This feature has no annotations

13_1_40cm_2_scaffold_345_25
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

Not on your lists

23635..24324
DNA (690bp) protein (230aa)
TATA-box-binding protein n=1 Tax=uncultured marine crenarchaeote E48-1C RepID=G9BAV1_9CREN
tbp; TATA-box-binding protein Tax=RBG_13_Bathyarchaeota_38_9_curated
tbp; TATA-box-binding protein
13_1_40cm_2_scaffold_345_26
Caldivirga maquilingensis, Caldivirga, Thermoproteales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

24342..24881
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Caldivirga maquilingensis (strain ATCC 700844 / DSM 13496 / JCM 10307 / IC-167) RepID=A8M9J6_CALMQ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABW00877.1}; TaxID=397948 species="Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Caldivirga.;" source="Caldivirga maquilingensis (s
Displaying 26 items

View Taxonomy