ggKbase home page

13_1_40cm_2_scaffold_1634

Search features with annotation key words

Displaying items 1-30 of 58 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_1634_1

Not on your lists

256..3483
DNA (3228bp) protein (1076aa)
Uncharacterized protein {ECO:0000313|EMBL:KKN58546.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
protease id=8267303 bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
peptidase S41
13_1_40cm_2_scaffold_1634_2
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3640..4206
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LSF9_HALO1
Uncharacterized protein {ECO:0000313|EMBL:ETX02334.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
putative membrane protein
13_1_40cm_2_scaffold_1634_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(4222..7335)
DNA (3114bp) protein (1038aa)
acriflavin resistance protein Tax=RBG_16_RIF_WS3X_71_46_curated
acriflavin resistance protein id=24473770 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Hydrocarboniphaga effusa genus=Hydrocarboniphaga taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin rbh
acriflavin resistance protein
13_1_40cm_2_scaffold_1634_4
RLO_PLX_64_10, Bacteria

Not on your lists

comp(7372..10731)
DNA (3360bp) protein (1120aa)
AcrB/AcrD/AcrF family protein n=1 Tax=Gallaecimonas xiamenensis 3-C-1 RepID=K2JKG1_9GAMM id=5224883 bin=16ft_combo_ws3_JS1 species=Gallaecimonas xiamenensis genus=Gallaecimonas taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
AcrB/AcrD/AcrF family protein; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
acriflavin resistance protein
13_1_40cm_2_scaffold_1634_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(10751..11974)
DNA (1224bp) protein (408aa)
RND family efflux transporter MFP subunit n=1 Tax=Xanthomonas sacchari NCPPB 4393 RepID=UPI000262B1A0 id=5224884 bin=16ft_combo_ws3_JS1 species=Xanthomonas sacchari genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
RND family efflux transporter MFP subunit Tax=RBG_16_RIF_WS3X_71_46_curated
RND family efflux transporter MFP subunit
13_1_40cm_2_scaffold_1634_6
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12120..12596)
DNA (477bp) protein (159aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036DA99C
Uncharacterized protein {ECO:0000313|EMBL:KGM52887.1}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concret
hypothetical protein
13_1_40cm_2_scaffold_1634_7
Desulfatibacillum alkenivorans, Desulfatibacillum, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12638..13966
DNA (1329bp) protein (443aa)
Uncharacterized protein n=1 Tax=Desulfatibacillum alkenivorans (strain AK-01) RepID=B8FI73_DESAA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL02640.1}; TaxID=439235 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfatibacillum.;" source="Desulfat
13_1_40cm_2_scaffold_1634_8
unknown

Not on your lists

comp(13957..14223)
DNA (267bp) protein (89aa)

This feature has no annotations

13_1_40cm_2_scaffold_1634_9
R_Omnitrophica_44_11, Omnitrophica, Bacteria

Not on your lists

14601..15023
DNA (423bp) protein (141aa)
mechanosensitive ion channel protein MscS n=1 Tax=Calescamantes bacterium JGI 0000106-G12 RepID=UPI0003B6B551
MscS Mechanosensitive ion channel Tax=RIFCSPLOWO2_02_FULL_Omnitrophica_44_11_curated
MscS Mechanosensitive ion channel
13_1_40cm_2_scaffold_1634_10
RBG_16_Planctomycetes_64_10_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

15053..16045
DNA (993bp) protein (331aa)
ornithine cyclodeaminase (EC:4.3.1.12); K01750 ornithine cyclodeaminase [EC:4.3.1.12] Tax=RBG_16_Planctomycetes_64_10_curated
ornithine cyclodeaminase (EC:4.3.1.12)
Ornithine cyclodeaminase id=8267564 bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
13_1_40cm_2_scaffold_1634_11
RBG_19FT_COMBO_Planctomycetes_48_8_curated, Physcisphaerae, Planctomycetes, Bacteria

Not on your lists

16350..17015
DNA (666bp) protein (222aa)
TetR family transcriptional regulator Tax=RBG_19FT_COMBO_Planctomycetes_48_8_curated
Regulatory protein TetR id=4095739 bin=GWF2_Planctomycete_41_51 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWF2_Planctomycete_41_51 organism_group=Planctomycetes organism_desc=a211
TetR family transcriptional regulator
13_1_40cm_2_scaffold_1634_12
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

17012..18463
DNA (1452bp) protein (484aa)
Outer membrane efflux protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HB96_ANADF rbh
outer membrane efflux protein Tax=RBG_13_OP8X_37_8_curated
outer membrane efflux protein
13_1_40cm_2_scaffold_1634_13
CG_Nitrosp_02, Nitrospirae, Bacteria

Not on your lists

18460..19632
DNA (1173bp) protein (391aa)
Efflux pump, RND family, membrane fusion lipoprotein n=2 Tax=Geobacter metallireducens RepID=Q39V42_GEOMG
RND family efflux transporter MFP subunit; K07799 putative multidrug efflux transporter MdtA Tax=CG_Nitrosp_02
RND family efflux pump membrane fusion lipoprotein
13_1_40cm_2_scaffold_1634_14
CSP1_8_Deltaproteobacteria, 43F-1404R, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19629..21464
DNA (1836bp) protein (612aa)
acriflavin resistance protein; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family id=14623092 bin=bin5_DeltaP species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
acriflavin resistance protein; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family Tax=CSP1_8_Deltaproteobacteria
acriflavin resistance protein
13_1_40cm_2_scaffold_1634_15
CSP1_8_Deltaproteobacteria, 43F-1404R, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21473..22720
DNA (1248bp) protein (416aa)
acriflavin resistance protein; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family id=14623092 bin=bin5_DeltaP species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
acriflavin resistance protein; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family Tax=CSP1_8_Deltaproteobacteria
acriflavin resistance protein
13_1_40cm_2_scaffold_1634_16
Anoxybacillus ayderensis, Anoxybacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

22796..23848
DNA (1053bp) protein (351aa)
Ornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01689}; Short=OAT {ECO:0000256|HAMAP-Rule:MF_01689};; EC=2.6.1.13 {ECO:0000256|HAMAP-Rule:MF_01689};; Ornithine--oxo-acid aminotransferase {ECO:00
Ornithine aminotransferase n=1 Tax=Anoxybacillus sp. SK3-4 RepID=T0BFR2_9BACI
rocD; ornithine--oxo-acid transaminase
13_1_40cm_2_scaffold_1634_17
R_Deltaproteobacteria_44_53, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23848..23970
DNA (123bp) protein (41aa)
acetylornithine/succinyldiaminopimelate aminotransferase (EC:2.6.1.13); K00819 ornithine--oxo-acid transaminase [EC:2.6.1.13] Tax=RIFCSPHIGHO2_02_FULL_Deltaproteobacteria_44_53_curated
ornithine aminotransferase (EC:2.6.1.13)
ornithine--oxo-acid transaminase-like protein n=1 Tax=Paenibacillus larvae RepID=UPI0001F85DFA
13_1_40cm_2_scaffold_1634_18
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

24192..25079
DNA (888bp) protein (296aa)
Probable RNA methyltransferase Adeh_4229 n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Y4229_ANADE
ribosomal RNA large subunit methyltransferase N Tax=RBG_16_Acidobacteria_70_10_curated
ribosomal RNA large subunit methyltransferase N
13_1_40cm_2_scaffold_1634_19
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

25120..26601
DNA (1482bp) protein (494aa)
mmsA; methylmalonate-semialdehyde dehydrogenase (EC:1.2.1.27)
methylmalonic acid semialdehyde dehydrogenase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Methylmalonate-semialdehyde dehydrogenase id=4843145 bin=GWC2_Planctomycetes_45_44 species=Fischerella sp. JSC-11 genus=Fischerella taxon_order=Stigonematales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Planctomycetes_45_44 organism_group=Planctomycetes organism_desc=Novel; good
13_1_40cm_2_scaffold_1634_20
GWF2_Lentisphaerae_49_21_curated, Lentisphaerae, Bacteria

Not on your lists

26748..27440
DNA (693bp) protein (231aa)
Putative histidine secretory acid phosphatase id=3209969 bin=GWF2_Lentisphaerae_49_21 species=Leishmania mexicana genus=Leishmania taxon_order=Kinetoplastida taxon_class=unknown phylum=unknown tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
putative histidine secretory acid phosphatase Tax=GWF2_Lentisphaerae_49_21_curated
hypothetical protein
13_1_40cm_2_scaffold_1634_21
GWB1_Bdellovibrionales_55_8_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

comp(27601..28746)
DNA (1146bp) protein (382aa)
acdA2; acyl-CoA dehydrogenase (EC:1.3.99.3); K00249 acyl-CoA dehydrogenase [EC:1.3.99.3] Tax=GWB1_Bdellovibrionales_55_8_curated
acdA2; acyl-CoA dehydrogenase (EC:1.3.99.3)
Acyl-CoA dehydrogenase, C-terminal domain protein id=3752272 bin=GWB1_Deltaproteobacteria_rel_55_8 species=unknown genus=Leptospira taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Deltaproteobacteria_rel_55_8 organism_group=Deltaproteobacteria organism_desc=Good rbh
13_1_40cm_2_scaffold_1634_22
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(28860..29351)
DNA (492bp) protein (164aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q021R7_SOLUE
glyoxalase/bleomycin resistance protein/dioxygenase
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:ABJ84308.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;
13_1_40cm_2_scaffold_1634_23
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

29527..30999
DNA (1473bp) protein (491aa)
aldehyde dehydrogenase (acceptor); K00130 betaine-aldehyde dehydrogenase [EC:1.2.1.8] Tax=RBG_16_Acidobacteria_70_10_curated
Aldehyde dehydrogenase (Acceptor) n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRG3_KORVE
aldehyde dehydrogenase
13_1_40cm_2_scaffold_1634_24
RBG_19FT_COMBO_Chloroflexi_62_14_curated, Chloroflexi, Bacteria

Not on your lists

31013..31378
DNA (366bp) protein (122aa)
hypothetical protein id=1247753 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
hypothetical protein Tax=RBG_19FT_COMBO_Chloroflexi_62_14_curated
hypothetical protein
13_1_40cm_2_scaffold_1634_25
RBG_16_KB1_OP1_55_9_curated, KB1, Bacteria

Not on your lists

31421..32050
DNA (630bp) protein (210aa)
putative transmembrane protein n=1 Tax=Sphingomonas elodea RepID=UPI0002630661
isoprenylcysteine carboxyl methyltransferase Tax=RBG_16_KB1_OP1_55_9_curated
isoprenylcysteine carboxyl methyltransferase family protein
13_1_40cm_2_scaffold_1634_26
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32192..32752
DNA (561bp) protein (187aa)
hypothetical protein Tax=RBG_16_Anaeromyxobacter_69_14_curated
13_1_40cm_2_scaffold_1634_27
GWA2_WOR_2_47_8_curated, WOR-2, Bacteria

Not on your lists

32749..32976
DNA (228bp) protein (76aa)
hypothetical protein; K09922 hypothetical protein Tax=GWA2_WOR_2_47_8_curated
Putative uncharacterized protein id=2255190 bin=GWB2_CP_45_9 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
hypothetical protein
13_1_40cm_2_scaffold_1634_28
Rubrobacter radiotolerans, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

33051..34367
DNA (1317bp) protein (439aa)
2A51: chromate transporter, chromate ion transporter (CHR) family
2A51: chromate transporter, chromate ion transporter (CHR) family {ECO:0000313|EMBL:AHY47860.1}; TaxID=42256 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrob
Chromate transporter, chromate ion transporter (CHR) family id=3564804 bin=GWA2_Methylomirabilis_73_35 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_1634_29
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34529..34798
DNA (270bp) protein (90aa)
SWIB domain-containing protein possibly involved in chromatin remodeling n=1 Tax=Herbaspirillum sp. CF444 RepID=J2LHP5_9BURK
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
hypothetical protein
13_1_40cm_2_scaffold_1634_30
Reinekea blandensis, Reinekea, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34973..35701
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BB43_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EAR10656.1}; TaxID=314283 species="Bacteria; Proteobacteria; Gammaproteobacteria; Reinekea.;" source="Reinekea blandensis MED297.;"
hypothetical protein
Displaying items 1-30 of 58 in total

View Taxonomy