ggKbase home page

13_1_40cm_2_scaffold_2620

Search features with annotation key words

Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_2620_1
RBG_19FT_COMBO_Aminicenantes_65_30_curated, Aminicenantes, Bacteria

Not on your lists

3..1514
DNA (1512bp) protein (504aa)
DNA ligase (EC:6.5.1.2); K01972 DNA ligase (NAD+) [EC:6.5.1.2] id=16910140 bin=RBG_16_Aminicenantes_63_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_14 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
DNA ligase (EC:6.5.1.2); K01972 DNA ligase (NAD+) [EC:6.5.1.2] Tax=RBG_19FT_COMBO_Aminicenantes_65_30_curated
NAD-dependent DNA ligase (EC:6.5.1.2)
13_1_40cm_2_scaffold_2620_2
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

1534..2952
DNA (1419bp) protein (473aa)
Uncharacterized protein {ECO:0000313|EMBL:KDA53498.1}; TaxID=1312852 species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains id=3517099 bin=GWC2_Proteo_65_14_Ab886 species=Spirochaeta africana genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria rbh
Fis family two component sigma-54 specific transcriptional regulator
13_1_40cm_2_scaffold_2620_3
GWA2_Gallionellales_60_142_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3165..3608
DNA (444bp) protein (148aa)
PAS sensor protein n=1 Tax=Methylobacterium extorquens (strain PA1) RepID=A9W7H9_METEP
response regulator receiver; K07183 response regulator NasT Tax=GWA2_Gallionellales_60_142_curated
PAS sensor protein
13_1_40cm_2_scaffold_2620_4
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

4122..5714
DNA (1593bp) protein (531aa)
peptidase S1C, Do; K01362 [EC:3.4.21.-] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
Protease Do id=3516942 bin=GWC2_Proteo_65_14_Ab886 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
serine protease
13_1_40cm_2_scaffold_2620_5
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

5853..7319
DNA (1467bp) protein (489aa)
Fis family transcriptional regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
two component, sigma54 specific, Fis family transcriptional regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX id=12554124 bin=CNBR_ACIDO species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
Fis family transcriptional regulator
13_1_40cm_2_scaffold_2620_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

7348..8634
DNA (1287bp) protein (429aa)
fadI; 3-ketoacyl-CoA thiolase; K00632 acetyl-CoA acyltransferase [EC:2.3.1.16] id=24462133 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
fadI; 3-ketoacyl-CoA thiolase; K00632 acetyl-CoA acyltransferase [EC:2.3.1.16] Tax=RBG_16_RIF_WS3X_71_46_curated
fadI; 3-ketoacyl-CoA thiolase
13_1_40cm_2_scaffold_2620_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

8683..10971
DNA (2289bp) protein (763aa)
fadJ; multifunctional fatty acid oxidation complex subunit alpha (EC:1.1.1.35 4.2.1.17 5.1.2.3)
Fatty oxidation complex, alpha subunit n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BL13_9GAMM id=5225620 bin=16ft_combo_ws3_JS1 species=Nitrococcus mobilis genus=Nitrococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
fatty oxidation complex subunit alpha Tax=RBG_16_RIF_WS3X_71_46_curated
13_1_40cm_2_scaffold_2620_8
Plesiocystis pacifica, Plesiocystis, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11022..11777
DNA (756bp) protein (252aa)
Acyl-CoA dehydrogenase n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GDJ7_9DELT
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:EDM76040.1}; TaxID=391625 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Nannocystaceae; Plesiocystis.;" source="Plesioc
acyl-CoA dehydrogenase domain-containing protein
Displaying 8 items

View Taxonomy