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13_1_40cm_2_scaffold_2858

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_2858_1
unknown

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comp(3..104)
DNA (102bp) protein (34aa)

This feature has no annotations

13_1_40cm_2_scaffold_2858_2
RLO_PLX_64_10, Bacteria

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comp(91..321)
DNA (231bp) protein (77aa)
Uncharacterized protein n=2 Tax=Anaeromyxobacter RepID=B4UAX2_ANASK
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
hypothetical protein
13_1_40cm_2_scaffold_2858_3
BJP_IG2102_ACD39_51_10, ACD39, Bacteria

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comp(523..1746)
DNA (1224bp) protein (408aa)
Uncharacterized protein (Fragment) n=1 Tax=uncultured bacterium RepID=K2BVJ3_9BACT
response regulator receiver modulated metal dependent phosphohydrolase
Tax=BJP_IG2102_ACD39_51_10
13_1_40cm_2_scaffold_2858_4
R_Acidobacteria_68_18, Acidobacteria, Bacteria

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1938..3251
DNA (1314bp) protein (438aa)
kdtA; 3-deoxy-D-manno-octulosonic-acid transferase (EC:2.-.-.-) Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
kdtA; 3-deoxy-D-manno-octulosonic-acid transferase (EC:2.-.-.-) id=12555687 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
3-deoxy-D-manno-octulosonic-acid transferase
13_1_40cm_2_scaffold_2858_5
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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3248..4333
DNA (1086bp) protein (362aa)
tetraacyldisaccharide 4'-kinase (EC:2.7.1.130); K00912 tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] id=14627186 bin=bin7_NC10_sister species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
tetraacyldisaccharide 4'-kinase (EC:2.7.1.130); K00912 tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] Tax=CSP1_6_Rokubacteria
lpxK; Tetraacyldisaccharide 4'-kinase (Lipid A 4'-kinase) (EC:2.7.1.130)
13_1_40cm_2_scaffold_2858_6
RBG_13_Aminicenantes_62_12_curated, Aminicenantes, Bacteria

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4330..5349
DNA (1020bp) protein (340aa)
Lauroyl/myristoyl acyltransferase (EC:2.3.1.-) Tax=RBG_13_Aminicenantes_62_12_curated
Lipid A biosynthesis acyltransferase id=24398927 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
lipid A biosynthesis acyltransferase
13_1_40cm_2_scaffold_2858_7
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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5346..5924
DNA (579bp) protein (193aa)
histidinol-phosphate phosphatase family protein/HAD-superfamily hydrolase (EC:3.1.3.-); K03273 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] id=14627219 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
histidinol-phosphate phosphatase family protein/HAD-superfamily hydrolase (EC:3.1.3.-); K03273 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] Tax=CSP1_6_Rokubacteria
histidinol-phosphate phosphatase family protein/HAD-superfamily hydrolase (EC:3.1.3.-)
13_1_40cm_2_scaffold_2858_8
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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5921..6961
DNA (1041bp) protein (347aa)
ribokinase-like domain-containing protein Tax=RBG_16_Acidobacteria_70_10_curated
PfkB domain-containing protein id=14627220 bin=bin7_NC10_sister species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
ADP-heptose synthase
13_1_40cm_2_scaffold_2858_9

Not on your lists

6985..7458
DNA (474bp) protein (158aa)
D-beta-D-heptose 1-phosphate adenosyltransferase {ECO:0000313|EMBL:AHZ45558.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
cytidyltransferase-related domain-containing protein id=12555681 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
cytidyltransferase-related domain-containing protein
13_1_40cm_2_scaffold_2858_10
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists


comp(7480..7968)
DNA (489bp) protein (163aa)
50S ribosomal protein L17 n=1 Tax=Maricaulis sp. JL2009 RepID=UPI00039E559B
rplQ; 50S ribosomal protein L17; K02879 large subunit ribosomal protein L17 Tax=RBG_16_Acidobacteria_70_10_curated
rplQ; 50S ribosomal protein L17
13_1_40cm_2_scaffold_2858_11
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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comp(7976..8956)
DNA (981bp) protein (327aa)
DNA-directed RNA polymerase subunit alpha; K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
DNA-directed RNA polymerase subunit alpha n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=RPOA_KORVE
DNA-directed RNA polymerase subunit alpha
13_1_40cm_2_scaffold_2858_12
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists


comp(9003..9629)
DNA (627bp) protein (209aa)
30S ribosomal protein S4 n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=RS4_GEOUR
rpsD; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
rpsD; 30S ribosomal protein S4
13_1_40cm_2_scaffold_2858_13
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(9646..10212)
DNA (567bp) protein (189aa)
30S ribosomal protein S11 n=1 Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B4618F
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source
30S ribosomal protein S11
13_1_40cm_2_scaffold_2858_14
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(10239..10598)
DNA (360bp) protein (120aa)
30S ribosomal protein S13 n=12 Tax=Thermoanaerobacter RepID=RS13_THEP3
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
30S ribosomal protein S13
Displaying 14 items

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