ggKbase home page

13_1_40cm_2_scaffold_418

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_418_1
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

Not on your lists

comp(1..291)
DNA (291bp) protein (97aa)
MerR family transcriptional regulator n=1 Tax=uncultured Acidobacteria bacterium RepID=H5SFE0_9BACT
MerR family transcriptional regulator {ECO:0000313|EMBL:BAL54876.1}; TaxID=171953 species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium.;"
MerR family transcriptional regulator
13_1_40cm_2_scaffold_418_2
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(364..711)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ABC2_GEMAT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH39528.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-
13_1_40cm_2_scaffold_418_3
R_WOR_2_68_15, WOR-2, Bacteria

Not on your lists

comp(708..2501)
DNA (1794bp) protein (598aa)
phosphoenolpyruvate--protein phosphotransferase; K08483 phosphotransferase system, enzyme I, PtsI [EC:2.7.3.9] Tax=RIFCSPHIGHO2_02_FULL_WOR_2_68_15_curated
phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B3A89F
phosphoenolpyruvate-protein phosphotransferase
13_1_40cm_2_scaffold_418_4
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(2504..2773)
DNA (270bp) protein (90aa)
phosphotransferase system, phosphocarrier protein HPr; K11189 phosphocarrier protein id=12554068 bin=CNBR_ACIDO species=Eikenella corrodens genus=Eikenella taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein; K11189 phosphocarrier protein Tax=RBG_16_Acidobacteria_70_10_curated
PTS system phosphocarrier protein HPr
13_1_40cm_2_scaffold_418_5
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(2770..3216)
DNA (447bp) protein (149aa)
Phosphotransferase system, mannose/fructose-specific component IIA {ECO:0000313|EMBL:CDM66195.1}; EC=2.7.1.69 {ECO:0000313|EMBL:CDM66195.1};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacter
PTS system fructose subfamily IIA component n=1 Tax=Zymomonas mobilis subsp. pomaceae (strain ATCC 29192 / JCM 10191 / NBRC 13757 / NCIMB 11200 / NRRL B-4491) RepID=F8ESV6_ZYMMT
PTS system fructose subfamily IIA component
13_1_40cm_2_scaffold_418_6
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(3219..4109)
DNA (891bp) protein (297aa)
nucleotide-binding protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI0003819A76
hypothetical protein; K06958 UPF0042 nucleotide-binding protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
hypothetical protein
13_1_40cm_2_scaffold_418_7
R_Deltaproteobacteria_44_9, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4106..5059)
DNA (954bp) protein (318aa)
HPr kinase/phosphorylase; K06023 HPr kinase/phosphorylase [EC:2.7.11.- 2.7.4.-] Tax=RIFCSPLOWO2_02_Deltaproteobacteria_44_9_curated
HPr kinase/phosphorylase n=2 Tax=Geobacter metallireducens RepID=Q39W53_GEOMG
hprK; HPr kinase/phosphorylase
13_1_40cm_2_scaffold_418_8
CG_Deferri_01, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

Not on your lists

5265..6338
DNA (1074bp) protein (358aa)
Uncharacterized protein n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C731_DESTA rbh
hypothetical protein Tax=CG_Deferri_01
hypothetical protein
13_1_40cm_2_scaffold_418_9
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(6385..7626)
DNA (1242bp) protein (414aa)
3-oxoacyl-ACP synthase (EC:2.3.1.41); K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
3-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=B5YHD3_THEYD
beta-ketoacyl-acyl carrier protein synthase II
13_1_40cm_2_scaffold_418_10
Thermovibrio ammonificans, Thermovibrio, Desulfurobacteriales, Aquificae, Aquificae, Bacteria

Not on your lists

comp(7653..7889)
DNA (237bp) protein (79aa)
acyl carrier protein n=1 Tax=Desulfurobacterium sp. TC5-1 RepID=UPI0003B39E9D
acyl carrier protein
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=648996 species="Bacteria; Aquificae; Desulfurobacteriales; De
13_1_40cm_2_scaffold_418_11
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(7996..8745)
DNA (750bp) protein (250aa)
3-oxoacyl-(acyl-carrier-protein) reductase; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] Tax=RBG_16_Acidobacteria_70_10_curated
3-oxoacyl-(Acyl carrier protein) reductase n=1 Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=B5E8U4_GEOBB
fabG-2; 3-oxoacyl-ACP reductase
13_1_40cm_2_scaffold_418_12
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(8742..9659)
DNA (918bp) protein (306aa)
ACP S-malonyltransferase (EC:2.3.1.39); K00645 [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
Malonyl CoA-acyl carrier protein transacylase id=2547034 bin=GWC2_Methylomirabilis_70_16 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
malonyl CoA-acyl carrier protein transacylase
13_1_40cm_2_scaffold_418_13
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9713..10711)
DNA (999bp) protein (333aa)
3-oxoacyl-(acyl-carrier-protein) synthase III (EC:2.3.1.41)
3-oxoacyl-[acyl-carrier-protein] synthase 3 {ECO:0000256|HAMAP-Rule:MF_01815}; EC=2.3.1.180 {ECO:0000256|HAMAP-Rule:MF_01815};; 3-oxoacyl-[acyl-carrier-protein] synthase III {ECO:0000256|HAMAP-Rule:MF
3-oxoacyl-[acyl-carrier-protein] synthase 3 n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GF60_GEOUR rbh
13_1_40cm_2_scaffold_418_14
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

comp(10698..11762)
DNA (1065bp) protein (355aa)
phosphate acyltransferase; K03621 glycerol-3-phosphate acyltransferase PlsX [EC:2.3.1.15] Tax=RBG_13_OP8X_37_8_curated
Phosphate acyltransferase id=1882173 bin=GWD2_Nitrospirae-related_57_8 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits rbh
plsX; phosphate acyltransferase
13_1_40cm_2_scaffold_418_15
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists


comp(11876..12058)
DNA (183bp) protein (61aa)
50S ribosomal protein L32 n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=RL32_SOLUE
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
rpmF; 50S ribosomal protein L32
13_1_40cm_2_scaffold_418_16
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(12082..12597)
DNA (516bp) protein (172aa)
hypothetical protein; K07040 uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
hypothetical protein; K07040 uncharacterized protein id=12555163 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
13_1_40cm_2_scaffold_418_17
RBG_19FT_COMBO_Aminicenantes_65_30_curated, Aminicenantes, Bacteria

Not on your lists

comp(12705..14249)
DNA (1545bp) protein (515aa)
Zn finger domain-containing DnaJ-class molecular chaperone id=16910141 bin=RBG_16_Aminicenantes_63_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_14 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
Zn finger domain-containing DnaJ-class molecular chaperone Tax=RBG_19FT_COMBO_Aminicenantes_65_30_curated
13_1_40cm_2_scaffold_418_18
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(14246..15487)
DNA (1242bp) protein (414aa)
histidine kinase id=14430125 bin=bin3_NC10 species=ACD79 genus=ACD79 taxon_order=ACD79 taxon_class=ACD79 phylum=Clamydiae tax=bin3_NC10 organism_group=NC10
histidine kinase Tax=CSP1_5_NC10
ATP-binding region ATPase domain protein
13_1_40cm_2_scaffold_418_19
CG_Cyano_01, Cyanobacteria, Bacteria

Not on your lists

comp(15492..17411)
DNA (1920bp) protein (640aa)
Putative ATPase n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4CEY4_DESTA
two-component hybrid sensor and regulator Tax=CG_Cyano_01
putative ATPase
13_1_40cm_2_scaffold_418_20
RBG_13_Deltaproteobacteria_52_11b_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17468..18904)
DNA (1437bp) protein (479aa)
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains Tax=RBG_13_Deltaproteobacteria_52_11b_curated
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains id=4835122 bin=GWC2_Syntrophobacterales_56_13 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains
13_1_40cm_2_scaffold_418_21
Melioribacter roseus, Melioribacter, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

19292..20791
DNA (1500bp) protein (500aa)
Tetratricopeptide domain-containing protein n=1 Tax=Melioribacter roseus (strain P3M) RepID=I6Z6Q9_MELRP
tetratricopeptide domain-containing protein
Tetratricopeptide domain-containing protein {ECO:0000313|EMBL:AFN74850.1}; TaxID=1191523 species="Bacteria; Ignavibacteriae; Ignavibacteria; Ignavibacteriales; Melioribacteraceae; Melioribacter.;" sou
13_1_40cm_2_scaffold_418_22
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(20801..21571)
DNA (771bp) protein (257aa)
lytic transglycosylase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
soluble lytic murein transglycosylase and related regulatory protein
Lytic transglycosylase catalytic id=16806749 bin=RBG_16_Aminicenantes_66_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_66_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
13_1_40cm_2_scaffold_418_23
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(21635..23413)
DNA (1779bp) protein (593aa)
DNA mismatch repair protein MutL n=1 Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B529CF
DNA mismatch repair protein MutL; K03572 DNA mismatch repair protein MutL Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
mutL; DNA mismatch repair protein
13_1_40cm_2_scaffold_418_24
RBG_13_Deltaproteobacteria_65_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23431..24438)
DNA (1008bp) protein (336aa)
succinylglutamate desuccinylase/aspartoacylase; K06987 Tax=RBG_13_Deltaproteobacteria_65_10_curated
Succinylglutamate desuccinylase/aspartoacylase id=4001188 bin=GWB1_Deltaproteobacteria_rel_55_8 species=unknown genus=Halovivax taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWB1_Deltaproteobacteria_rel_55_8 organism_group=Deltaproteobacteria organism_desc=Good
succinylglutamate desuccinylase/aspartoacylase
13_1_40cm_2_scaffold_418_25
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24440..25351)
DNA (912bp) protein (304aa)
Ribosomal protein S6 modification protein n=1 Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8CA48_MYXFH
ribosomal protein S6 modification protein
Ribosomal protein S6 modification protein {ECO:0000313|EMBL:AEI63298.1}; TaxID=483219 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.
13_1_40cm_2_scaffold_418_26
GWB2_Deltaproteobacteria_55_19_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25320..28103)
DNA (2784bp) protein (928aa)
ppdK; pyruvate phosphate dikinase; K01006 pyruvate,orthophosphate dikinase [EC:2.7.9.1] Tax=GWB2_Deltaproteobacteria_55_19_curated
pyruvate phosphate dikinase (EC:2.7.9.1)
Pyruvate, phosphate dikinase id=2233812 bin=GWB2_Proteobacteria_55_19 species=Treponema phagedenis genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good rbh
13_1_40cm_2_scaffold_418_27
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(28103..30322)
DNA (2220bp) protein (740aa)
glycine--tRNA ligase (EC:6.1.1.14); K01879 glycyl-tRNA synthetase beta chain [EC:6.1.1.14] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
Glycyl-tRNA synthetase subunit beta (EC:6.1.1.14)
Glycine--tRNA ligase beta subunit n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CHI2_DESK7
13_1_40cm_2_scaffold_418_28
RBG_16_Deltaproteobacteria_50_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30319..31224)
DNA (906bp) protein (302aa)
glycyl-tRNA synthetase subunit alpha (EC:6.1.1.14); K01878 glycyl-tRNA synthetase alpha chain [EC:6.1.1.14] Tax=RBG_16_Deltaproteobacteria_50_11_curated
glyQ; glycyl-tRNA synthetase subunit alpha (EC:6.1.1.14)
Glycine--tRNA ligase alpha subunit n=1 Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9R947_AMMDK rbh
13_1_40cm_2_scaffold_418_29
RBG_13_Aminicenantes_63_10_curated, Aminicenantes, Bacteria

Not on your lists

comp(31252..31989)
DNA (738bp) protein (246aa)
DNA repair protein RecO; K03584 DNA repair protein RecO (recombination protein O) Tax=RBG_13_Aminicenantes_63_10_curated
DNA repair protein RecO; K03584 DNA repair protein RecO (recombination protein O) id=17227734 bin=RBG_16_Aminicenantes_66_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_66_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
DNA repair protein RecO
13_1_40cm_2_scaffold_418_30
RBG_13_Deltaproteobacteria_49_15_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32038..33381)
DNA (1344bp) protein (448aa)
Magnesium transporter n=1 Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A6Z6_PELCD
magnesium transporter; K06213 magnesium transporter Tax=RBG_13_Deltaproteobacteria_49_15_curated
mgtE; magnesium transporter
Displaying items 1-30 of 34 in total

View Taxonomy