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13_1_40cm_2_scaffold_4688

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_4688_1
CG_Omnitr_01, Omnitrophica, Bacteria

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60..263
DNA (204bp) protein (68aa)
cold-shock DNA-binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family) Tax=CG_Omnitr_01
cold-shock DNA-binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family) id=14632633 bin=bin9_gal15 species=Isoptericola variabilis genus=Isoptericola taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin9_gal15 organism_group=GAL15
cold shock protein
13_1_40cm_2_scaffold_4688_2
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(316..2541)
DNA (2226bp) protein (742aa)
Dipeptidyl aminopeptidase/acylaminoacyl peptidase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DLI7_SINAD
dipeptidyl aminopeptidase/acylaminoacyl peptidase
Dipeptidyl aminopeptidase/acylaminoacyl peptidase {ECO:0000313|EMBL:AGA30107.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;"
13_1_40cm_2_scaffold_4688_3
Thermobaculum terrenum, Thermobaculum, Bacteria

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2730..3659
DNA (930bp) protein (310aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CEK7_THET1
PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) {ECO:0000313|EMBL:ACZ41363.1}; TaxID=525904 species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798
13_1_40cm_2_scaffold_4688_4
Desulfomicrobium baculatum, Desulfomicrobium, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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3730..4524
DNA (795bp) protein (265aa)
UDP kinase (EC:3.6.1.27)
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphat
Undecaprenyl-diphosphatase n=1 Tax=Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378) RepID=C7LUH4_DESBD
13_1_40cm_2_scaffold_4688_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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4526..6343
DNA (1818bp) protein (606aa)
amino acid permease-associated protein Tax=GWA2_Rokubacteria_73_35_curated
amino acid permease-associated protein id=14430852 bin=bin3_NC10 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin3_NC10 organism_group=NC10
hypothetical protein
13_1_40cm_2_scaffold_4688_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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6466..6936
DNA (471bp) protein (157aa)
Protease Do n=3 Tax=Rhodopseudomonas palustris RepID=B3QA63_RHOPT id=5225405 bin=16ft_combo_ws3_JS1 species=Rhodopseudomonas palustris genus=Rhodopseudomonas taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
protease Do Tax=RBG_16_RIF_WS3X_71_46_curated
periplasmic protease
13_1_40cm_2_scaffold_4688_7
unknown

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6952..7308
DNA (357bp) protein (119aa)

This feature has no annotations

13_1_40cm_2_scaffold_4688_8
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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comp(7414..7617)
DNA (204bp) protein (68aa)
cold-shock DNA-binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family) Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
cold-shock DNA-binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family) id=12555628 bin=CNBR_ACIDO species=Bacillus cellulosilyticus genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
cspD; cold shock protein, CspA family
13_1_40cm_2_scaffold_4688_9
Brachybacterium phenoliresistens, Brachybacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7817..9358)
DNA (1542bp) protein (514aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=396014 specie
Transcription termination factor Rho n=1 Tax=Corynebacterium pyruviciproducens ATCC BAA-1742 RepID=S3A478_9CORY
transcription termination factor Rho
13_1_40cm_2_scaffold_4688_10
Bacillus thermoamylovorans, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

9615..10493
DNA (879bp) protein (293aa)
Calcineurin-like phosphoesterase n=1 Tax=Paenibacillus sp. Aloe-11 RepID=H6CN96_9BACL
Strain B4064 NODE_46, whole genome shotgun sequence {ECO:0000313|EMBL:KIO66954.1}; Strain B4065 NODE_372, whole genome shotgun sequence {ECO:0000313|EMBL:KIO59168.1}; Strain B4166 NODE_81, whole genom
calcineurin-like phosphoesterase
13_1_40cm_2_scaffold_4688_11
unknown

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11381..11584
DNA (204bp) protein (68aa)

This feature has no annotations

13_1_40cm_2_scaffold_4688_12
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(11568..12863)
DNA (1296bp) protein (432aa)
recombination factor protein RarA; K07478 putative ATPase Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
Putative polynucleotide enzyme with nucleotide triphosphate hydrolase domain id=4329549 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
recombination factor protein RarA
13_1_40cm_2_scaffold_4688_13
Leptospira borgpetersenii, Leptospira, Spirochaetia, Spirochaetes, Bacteria

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comp(13052..13663)
DNA (612bp) protein (204aa)
Bacteriophage CI repressor protein {ECO:0000313|EMBL:KGE24331.1}; TaxID=280505 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptospira.;" source="Leptospira borgpetersenii serovar B
Displaying 13 items

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