ggKbase home page

13_1_40cm_2_scaffold_531

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_531_1
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(2..1009)
DNA (1008bp) protein (336aa)
FG-GAP repeat protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZQK0_OPITP
FG-GAP repeat-containing protein
FG-GAP repeat protein {ECO:0000313|EMBL:ACB75609.1}; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain
13_1_40cm_2_scaffold_531_2
unknown

Not on your lists

comp(1184..1540)
DNA (357bp) protein (119aa)

This feature has no annotations

13_1_40cm_2_scaffold_531_3
R_Deltaproteobacteria_42_39, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1902..2702)
DNA (801bp) protein (267aa)
Hypothetical exported protein id=3343157 bin=GWC2_Deltaproteobacteria_42_51 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Deltaproteobacteria_42_39_curated
hypothetical protein
13_1_40cm_2_scaffold_531_4
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

2855..4117
DNA (1263bp) protein (421aa)
2-isopropylmalate synthase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FMN1_SORC5 id=5224560 bin=16ft_combo_ws3_JS1 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
2-isopropylmalate synthase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
2-isopropylmalate synthase
13_1_40cm_2_scaffold_531_5
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

comp(4155..5072)
DNA (918bp) protein (306aa)
Diguanylate cyclase (GGDEF) domain protein n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LH77_CHLTF
diguanylate cyclase domain-containing protein
Diguanylate cyclase (GGDEF) domain protein {ECO:0000313|EMBL:AEP11819.1}; TaxID=981222 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium
13_1_40cm_2_scaffold_531_6
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

comp(5083..6000)
DNA (918bp) protein (306aa)
Diguanylate cyclase (GGDEF) domain protein n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LH77_CHLTF
diguanylate cyclase domain-containing protein
Diguanylate cyclase (GGDEF) domain protein {ECO:0000313|EMBL:AEP11819.1}; TaxID=981222 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium
13_1_40cm_2_scaffold_531_7

Not on your lists

comp(6121..7554)
DNA (1434bp) protein (478aa)
Peptidase M24 n=1 Tax=alpha proteobacterium JLT2015 RepID=M2TLI9_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KKN07967.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
putative M24B family peptidase
13_1_40cm_2_scaffold_531_8
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(7989..9224)
DNA (1236bp) protein (412aa)
MinD-related ATP-binding protein id=3738387 bin=GWC2_Nitrospirae_57_13 species=delta proteobacterium MLMS-1 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
ATP-binding protein; K04562 flagellar biosynthesis protein FlhG Tax=GWC2_Nitrospirae_57_13_curated
ATP-binding protein
13_1_40cm_2_scaffold_531_9
RBG_13_Caldithrix_44_9_curated, Caldithrix, Bacteria

Not on your lists

9374..10192
DNA (819bp) protein (273aa)
hypothetical protein Tax=RBG_13_Caldithrix_44_9_curated
13_1_40cm_2_scaffold_531_10
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

10279..11763
DNA (1485bp) protein (495aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidat
Periplasmic sensor signal transduction histidine kinase n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5ML69_9BACT
periplasmic sensor signal transduction histidine kinase
13_1_40cm_2_scaffold_531_11
RBG_19FT_COMBO_Nitrospirae_42_15_curated, Nitrospirae, Bacteria

Not on your lists

11783..13255
DNA (1473bp) protein (491aa)
Sigma-54-dependent transcriptional response regulator n=2 Tax=Geobacter sulfurreducens RepID=D7AEB9_GEOSK
two component sigma-54 specific Fis family transcriptional regulator Tax=RBG_19FT_COMBO_Nitrospirae_42_15_curated
sigma-54-dependent transcriptional response regulator
13_1_40cm_2_scaffold_531_12
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

13410..13775
DNA (366bp) protein (122aa)
hypothetical protein Tax=RBG_13_Nitrospirae_43_8_curated
13_1_40cm_2_scaffold_531_13
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13832..15829)
DNA (1998bp) protein (666aa)
Glycosyl transferase, family 39 n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G7S9_GEOUR
glycosyl transferase family protein
Glycosyl transferase, family 39 {ECO:0000313|EMBL:ABQ27847.1}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter u
13_1_40cm_2_scaffold_531_14
unknown

Not on your lists

comp(16435..16710)
DNA (276bp) protein (92aa)

This feature has no annotations

13_1_40cm_2_scaffold_531_15
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

16935..18353
DNA (1419bp) protein (473aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI00037A7F66
Lysylphosphatidylglycerol synthetase, domain of unknown function DUF2156
Uncharacterized protein {ECO:0000313|EMBL:AHG87645.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_2_scaffold_531_16
RBG_13_Deltaproteobacteria_65_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18353..19834
DNA (1482bp) protein (494aa)
virulence factor family protein id=12494610 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
virulence factor family protein Tax=RBG_13_Deltaproteobacteria_65_10_curated
virulence factor family protein
13_1_40cm_2_scaffold_531_17
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19867..21585)
DNA (1719bp) protein (573aa)
periplasmic component of the Tol biopolymer transport system Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
Secreted protein id=2742735 bin=GWF1_Xanthomonadales_69_6 species=Rhodanobacter thiooxydans genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
periplasmic component of the Tol biopolymer transport system
13_1_40cm_2_scaffold_531_18
bacterium UASB270, Bacteria

Not on your lists

comp(22372..23391)
DNA (1020bp) protein (340aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=1499967 species="Bacteria.;" source="bacterium UASB270.;"
glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12)
Strongly similar to glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZ82_9BACT
13_1_40cm_2_scaffold_531_19
unknown

Not on your lists

comp(23448..24614)
DNA (1167bp) protein (389aa)

This feature has no annotations

Displaying 19 items

View Taxonomy