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13_1_40cm_2_scaffold_915

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_915_1
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

2..973
DNA (972bp) protein (324aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1312852 species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobac
tRNA-dihydrouridine synthase n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LJH2_CHLTF
putative TIM-barrel protein, nifR3 family
13_1_40cm_2_scaffold_915_2
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(985..1563)
DNA (579bp) protein (193aa)
Glutathione S-transferase domain protein n=1 Tax=Geitlerinema sp. PCC 7407 RepID=K9S9K5_9CYAN
glutathione S-transferase Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
glutathione S-transferase
13_1_40cm_2_scaffold_915_3
Geoalkalibacter ferrihydriticus, Geoalkalibacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1578..3851)
DNA (2274bp) protein (758aa)
Ribonuclease E n=2 Tax=Geobacter metallireducens RepID=Q39SK9_GEOMG
Uncharacterized protein {ECO:0000313|EMBL:KIH76402.1}; TaxID=1121915 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geoalkalibacter.;" source="Geoalkalibac
ribonuclease E
13_1_40cm_2_scaffold_915_4
RLO_PLX_64_10, Bacteria

Not on your lists

4088..5416
DNA (1329bp) protein (443aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
hypothetical protein id=24533801 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Blastopirellula marina genus=Blastopirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
13_1_40cm_2_scaffold_915_5
RLO_PLX_64_10, Bacteria

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5467..6306
DNA (840bp) protein (280aa)
Radical SAM domain protein n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZUJ6_9PLAN id=5223192 bin=16ft_combo_ws3_JS1 species=Blastopirellula marina genus=Blastopirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
radical SAM domain-containing protein Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
radical SAM domain-containing protein
13_1_40cm_2_scaffold_915_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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6303..7133
DNA (831bp) protein (277aa)
metallophosphoesterase id=24460619 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Blastopirellula marina genus=Blastopirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
metallophosphoesterase Tax=RBG_16_RIF_WS3X_71_46_curated
metallophosphoesterase
13_1_40cm_2_scaffold_915_7
RLO_Deltaproteobacteria_40_28, Deltaproteobacteria, Proteobacteria, Bacteria

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7181..8005
DNA (825bp) protein (275aa)
integral membrane protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_40_28_curated
Putative integral membrane protein id=4324785 bin=GWA2_OP3_53_43 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3 rbh
hypothetical protein
13_1_40cm_2_scaffold_915_8
RLO_Deltaproteobacteria_40_28, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8009..9841
DNA (1833bp) protein (611aa)
sdhA; succinate dehydrogenase flavoprotein subunit; K00239 succinate dehydrogenase flavoprotein subunit [EC:1.3.99.1] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_40_28_curated
Succinate dehydrogenase flavoprotein subunit n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0LEN5_9BACT
sdhA; succinate dehydrogenase flavoprotein subunit
13_1_40cm_2_scaffold_915_9
GWA2_WOR_2_53_43_curated, WOR-2, Bacteria

Not on your lists

9834..10577
DNA (744bp) protein (248aa)
Putative succinate dehydrogenase, iron-sulfur subunit id=4324788 bin=GWA2_OP3_53_43 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3 rbh
putative succinate dehydrogenase, iron-sulfur subunit Tax=GWA2_WOR_2_53_43_curated
sdhB1; succinate dehydrogenase iron-sulfur subunit sdhb1
13_1_40cm_2_scaffold_915_10
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

10582..10959
DNA (378bp) protein (126aa)
amino acid-binding ACT domain-containing protein
hypothetical protein id=14628067 bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=CSP1_6_Rokubacteria
13_1_40cm_2_scaffold_915_11
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(10981..12945)
DNA (1965bp) protein (655aa)
acetyl-coenzyme A synthetase (EC:6.2.1.1); K01895 acetyl-CoA synthetase [EC:6.2.1.1] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
acs; acetyl-coenzyme A synthetase (EC:6.2.1.1); K01895 acetyl-CoA synthetase [EC:6.2.1.1] id=12554467 bin=CNBR_ACIDO species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? rbh
Acetyl-coenzyme A synthetase
13_1_40cm_2_scaffold_915_12
RBG_13_Caldithrix_44_9_curated, Caldithrix, Bacteria

Not on your lists

13082..13993
DNA (912bp) protein (304aa)
Proline dehydrogenase (EC:1.5.99.8); K00318 proline dehydrogenase [EC:1.5.99.8] Tax=RBG_13_Caldithrix_44_9_curated
L-proline dehydrogenase (EC:1.5.99.8)
Proline dehydrogenase n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XT27_9BACT rbh
13_1_40cm_2_scaffold_915_13
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14057..15040)
DNA (984bp) protein (328aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=394096 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cys
multi-sensor signal transduction histidine kinase (EC:2.7.13.3)
Histidine kinase n=1 Tax=Desulfovibrio magneticus str. Maddingley MBC34 RepID=K6HCM3_9DELT
13_1_40cm_2_scaffold_915_14
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(15073..15453)
DNA (381bp) protein (127aa)
Ferredoxin id=3388822 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
ferredoxin Tax=GWA2_Rokubacteria_70_23_curated
ferredoxin
13_1_40cm_2_scaffold_915_15
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

15588..16286
DNA (699bp) protein (233aa)
Putative Peptidase S16, lon-like n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAN4_9BACT id=5224508 bin=16ft_combo_ws3_JS1 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
putative peptidase; K07157 Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
ATP-dependent protease La
13_1_40cm_2_scaffold_915_16
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(16352..17545)
DNA (1194bp) protein (398aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; K03527 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [EC:1.17.1.2] Tax=RBG_16_Acidobacteria_70_10_curated
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LJM5_CHLTF rbh
hydroxymethylbutenyl pyrophosphate reductase
13_1_40cm_2_scaffold_915_17
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(17605..18414)
DNA (810bp) protein (270aa)
Formate dehydrogenase family accessory protein FdhD n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DJ24_SINAD
formate dehydrogenase family accessory protein FdhD
Protein FdhD homolog {ECO:0000256|HAMAP-Rule:MF_00187, ECO:0000256|SAAS:SAAS00093832}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphae
13_1_40cm_2_scaffold_915_18
unknown

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18702..19427
DNA (726bp) protein (242aa)

This feature has no annotations

13_1_40cm_2_scaffold_915_19
RLO_PLX_64_10, Bacteria

Not on your lists

comp(19548..20087)
DNA (540bp) protein (180aa)
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
13_1_40cm_2_scaffold_915_20
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(20112..20591)
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MH06_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE69037.1}; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
13_1_40cm_2_scaffold_915_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(20804..21655)
DNA (852bp) protein (284aa)
periplasmic binding protein; K02016 iron complex transport system substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Periplasmic binding protein id=2285114 bin=GWA2_Methylomirabilis_73_35 species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
periplasmic binding protein
13_1_40cm_2_scaffold_915_22
RBG_19FT_COMBO_Nitrospirae_42_15_curated, Nitrospirae, Bacteria

Not on your lists

22113..23390
DNA (1278bp) protein (426aa)
GAF domain-containing sensor diguanylate cyclase Tax=RBG_19FT_COMBO_Nitrospirae_42_15_curated
Conserved uncharacterized protein id=4087792 bin=GWC2_Deltaproteobacteria_42_51 species=ACD39 genus=ACD39 taxon_order=ACD39 taxon_class=ACD39 phylum=unknown tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
GAF sensor-containing diguanylate cyclase
13_1_40cm_2_scaffold_915_23
BJP_IG2102_Coriobacteriales_64_17, Coriobacteriales, Coriobacteridae, Actinobacteria, Bacteria

Not on your lists

23503..24699
DNA (1197bp) protein (399aa)
Diguanylate phosphodiesterase id=1999536 bin=GWD2_Nitrospirae-related_57_8 species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
signal transduction protein
Tax=BJP_IG2102_Coriobacteriales_64_17
13_1_40cm_2_scaffold_915_24
unknown

Not on your lists

comp(24867..25079)
DNA (213bp) protein (71aa)

This feature has no annotations

13_1_40cm_2_scaffold_915_25
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

25342..26751
DNA (1410bp) protein (470aa)
two component, sigma54 specific, Fis family transcriptional regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_
Response regulator receiver:Sigma-54 factor, interaction region:Helix-turn-helix, Fis-type:ATPase associated with various cellular activities, AAA_5 id=4603062 bin=GWC2_Methylomirabilis_70_16 species=Chlorobium ferrooxidans genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains
13_1_40cm_2_scaffold_915_26
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(26741..27814)
DNA (1074bp) protein (358aa)
mandelate racemase/muconate lactonizing protein id=14430102 bin=bin3_NC10 species=Desulfococcus multivorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
mandelate racemase/muconate lactonizing protein Tax=CSP1_5_NC10
mandelate racemase/muconate lactonizing protein
13_1_40cm_2_scaffold_915_27
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(27811..28890)
DNA (1080bp) protein (360aa)
hypothetical protein id=14430100 bin=bin3_NC10 species=Lewinella persica genus=Lewinella taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=bin3_NC10 organism_group=NC10
hypothetical protein Tax=CSP1_5_NC10
hypothetical protein
13_1_40cm_2_scaffold_915_28
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

28973..29632
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P0R3_9BACT
hypothetical protein Tax=RBG_13_Acidobacteria_68_16_curated
hypothetical protein
13_1_40cm_2_scaffold_915_29
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

29629..29841
DNA (213bp) protein (71aa)
Thiamin biosynthesis ThiS n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9ICK2_BORPD
Thiamine biosynthesis protein ThiS {ECO:0000313|EMBL:CDM64427.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
thiS; thiamin biosynthesis ThiS
13_1_40cm_2_scaffold_915_30
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

29847..30626
DNA (780bp) protein (260aa)
Thiazole synthase {ECO:0000255|HAMAP-Rule:MF_00443}; EC=2.8.1.10 {ECO:0000255|HAMAP-Rule:MF_00443};; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candi
Thiazole synthase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=THIG_SOLUE
thiG; thiazole synthase
Displaying items 1-30 of 38 in total

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